Class org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest

20

tests

0

failures

1

ignored

4.137s

duration

100%

successful

Tests

Test Duration Result
testConvertHeaderlessHadoopBamShardToBam 0.005s passed
testInvalidSort 1.235s passed
testPathExists - ignored
testPutReadsWithSameNameInSamePartition[0](1, 1, 2, [I@42858600) 0.604s passed
testPutReadsWithSameNameInSamePartition[10](20, 7, 5, [I@46ae329d) 0.072s passed
testPutReadsWithSameNameInSamePartition[1](2, 2, 2, [I@522dbb47) 0.072s passed
testPutReadsWithSameNameInSamePartition[2](3, 2, 2, [I@1b5bb3b6) 0.078s passed
testPutReadsWithSameNameInSamePartition[3](3, 3, 2, [I@59810563) 0.066s passed
testPutReadsWithSameNameInSamePartition[4](6, 2, 2, [I@5ba6898d) 0.051s passed
testPutReadsWithSameNameInSamePartition[5](6, 3, 2, [I@4375a4e0) 0.059s passed
testPutReadsWithSameNameInSamePartition[6](6, 4, 2, [I@29bf6889) 0.051s passed
testPutReadsWithSameNameInSamePartition[7](2, 2, 3, [I@5d636925) 0.039s passed
testPutReadsWithSameNameInSamePartition[8](3, 2, 10, [I@25a60e5a) 0.041s passed
testPutReadsWithSameNameInSamePartition[9](6, 4, 3, [I@17811b2c) 0.047s passed
testReadsMustBeQueryGroupedToFixPartitions 0.002s passed
testReadsPairsSpanningMultiplePartitions 0.299s passed
testSortCoordinateSortMatchesHtsjdk 0.448s passed
testSortQuerynameFixesPartitionBoundaries 0.253s passed
testSortQuerynameSortMatchesHtsjdk 0.647s passed
testSortUsingElementsAsKeys 0.067s passed

Standard error

16:23:54.105 WARN  SparkContextFactory - Environment variables HELLBENDER_TEST_PROJECT and HELLBENDER_JSON_SERVICE_ACCOUNT_KEY must be set or the GCS hadoop connector will not be configured properly
16:23:54.536 WARN  NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable