Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.070s |
passed |
| testMultiSampleBam |
0.079s |
passed |
| testUrlEncoding |
0.067s |
passed |
Standard error
22:35:37.711 INFO GetSampleName - ------------------------------------------------------------
22:35:37.711 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
22:35:37.711 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
22:35:37.711 INFO GetSampleName - Executing as runner@fv-az1690-153 on Linux v6.8.0-1021-azure amd64
22:35:37.711 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:35:37.711 INFO GetSampleName - Start Date/Time: March 28, 2025 at 10:35:37 PM UTC
22:35:37.712 INFO GetSampleName - ------------------------------------------------------------
22:35:37.712 INFO GetSampleName - ------------------------------------------------------------
22:35:37.712 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:35:37.712 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:35:37.712 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:35:37.712 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:35:37.712 INFO GetSampleName - Deflater: IntelDeflater
22:35:37.712 INFO GetSampleName - Inflater: IntelInflater
22:35:37.712 INFO GetSampleName - GCS max retries/reopens: 20
22:35:37.712 INFO GetSampleName - Requester pays: disabled
22:35:37.712 INFO GetSampleName - Initializing engine
22:35:37.713 INFO GetSampleName - Done initializing engine
22:35:37.714 INFO ProgressMeter - Starting traversal
22:35:37.714 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
22:35:37.714 INFO ProgressMeter - unmapped 0.0 0 NaN
22:35:37.714 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
22:35:37.714 INFO GetSampleName - Shutting down engine
[March 28, 2025 at 10:35:37 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:35:37 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
22:35:37.861 INFO GetSampleName - ------------------------------------------------------------
22:35:37.861 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
22:35:37.861 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
22:35:37.861 INFO GetSampleName - Executing as runner@fv-az1690-153 on Linux v6.8.0-1021-azure amd64
22:35:37.861 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:35:37.861 INFO GetSampleName - Start Date/Time: March 28, 2025 at 10:35:37 PM UTC
22:35:37.861 INFO GetSampleName - ------------------------------------------------------------
22:35:37.861 INFO GetSampleName - ------------------------------------------------------------
22:35:37.861 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:35:37.861 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:35:37.861 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:35:37.861 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:35:37.861 INFO GetSampleName - Deflater: IntelDeflater
22:35:37.861 INFO GetSampleName - Inflater: IntelInflater
22:35:37.861 INFO GetSampleName - GCS max retries/reopens: 20
22:35:37.862 INFO GetSampleName - Requester pays: disabled
22:35:37.862 INFO GetSampleName - Initializing engine
22:35:37.862 INFO GetSampleName - Done initializing engine
22:35:37.862 INFO ProgressMeter - Starting traversal
22:35:37.862 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
22:35:37.863 INFO ProgressMeter - unmapped 0.0 0 0.0
22:35:37.863 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
22:35:37.863 INFO GetSampleName - Shutting down engine
[March 28, 2025 at 10:35:37 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000