Class org.broadinstitute.hellbender.tools.copynumber.CollectReadCountsIntegrationTest
Tests
| Test |
Duration |
Result |
| testHDF5Output[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878-expected.tsv) |
0.127s |
passed |
| testIntervalExclusionPadding |
0.070s |
passed |
| testIntervalMergingRule |
0.069s |
passed |
| testIntervalPadding |
0.066s |
passed |
| testIntervalSetRule |
0.067s |
passed |
| testTSVOutput[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878-expected.tsv) |
0.068s |
passed |
Standard error
[March 28, 2025 at 10:35:54 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:35:54 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:35:54 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:35:54 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:35:54 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:35:54 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000