Class org.broadinstitute.hellbender.tools.copynumber.ModelSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.copynumber > ModelSegmentsIntegrationTest
33

tests
0

failures
0

ignored
42.914s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testInvalidDataModesMultipleSamples[0]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.260s passed
testInvalidDataModesMultipleSamples[10]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.061s passed
testInvalidDataModesMultipleSamples[11]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.063s passed
testInvalidDataModesMultipleSamples[12]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.053s passed
testInvalidDataModesMultipleSamples[13]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.052s passed
testInvalidDataModesMultipleSamples[14]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.052s passed
testInvalidDataModesMultipleSamples[1]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.189s passed
testInvalidDataModesMultipleSamples[2]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 0.071s passed
testInvalidDataModesMultipleSamples[3]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.271s passed
testInvalidDataModesMultipleSamples[4]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.217s passed
testInvalidDataModesMultipleSamples[5](null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.196s passed
testInvalidDataModesMultipleSamples[6]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.280s passed
testInvalidDataModesMultipleSamples[7](null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.249s passed
testInvalidDataModesMultipleSamples[8]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.188s passed
testInvalidDataModesMultipleSamples[9]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.195s passed
testInvalidDataModesSingleSample[0](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.178s passed
testInvalidDataModesSingleSample[1](null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.182s passed
testInvalidDataModesSingleSample[2](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.123s passed
testInvalidDataModesSingleSample[3](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 0.123s passed
testInvalidDataModesSingleSample[4](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.058s passed
testInvalidDataModesSingleSample[5](null, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.054s passed
testMetadata 0.291s passed
testValidDataModesMultipleSamples[0](multiple-sample-cr-ac-nac, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 5.524s passed
testValidDataModesMultipleSamples[1](multiple-sample-cr-ac, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.345s passed
testValidDataModesMultipleSamples[2](multiple-sample-ac-nac, null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.430s passed
testValidDataModesMultipleSamples[3](multiple-sample-cr, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 1.329s passed
testValidDataModesMultipleSamples[4](multiple-sample-ac, null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.247s passed
testValidDataModesSingleSample[0](single-sample-cr-ac-nac, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.123s passed
testValidDataModesSingleSample[1](single-sample-cr-ac, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.250s passed
testValidDataModesSingleSample[2](single-sample-ac-nac, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 3.662s passed
testValidDataModesSingleSample[3](single-sample-cr, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, null) 1.089s passed
testValidDataModesSingleSample[4](single-sample-ac, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.509s passed

Standard error

[March 28, 2025 at 10:36:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:36:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:36:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:36:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:36:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:33 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:33 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:33 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:33 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:34 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:35 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:36 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:40 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:41 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:46 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:46 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:52 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:36:57 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:37:01 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:37:05 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:37:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:37:10 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:37:14 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=1048576000