Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.211s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.220s passed
testCountVariantsWithIntervals[10](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.224s passed
testCountVariantsWithIntervals[11](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.217s passed
testCountVariantsWithIntervals[1](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.243s passed
testCountVariantsWithIntervals[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.240s passed
testCountVariantsWithIntervals[3](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.221s passed
testCountVariantsWithIntervals[4](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.220s passed
testCountVariantsWithIntervals[5](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.217s passed
testCountVariantsWithIntervals[6](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.218s passed
testCountVariantsWithIntervals[7](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.238s passed
testCountVariantsWithIntervals[8](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.223s passed
testCountVariantsWithIntervals[9](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.230s passed
testNoNPRWhenOutputIsUnspecified 0.080s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.084s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.081s passed
test[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.255s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[March 28, 2025 at 10:44:53 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:44:53 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:44:55 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:56 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:56 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:56 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:56 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:57 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:57 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:57 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:57 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:57 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:58 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:58 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:58 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:58 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000