Class org.broadinstitute.hellbender.tools.spark.pipelines.FlagStatSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| flagStatSparkLocalNoInterval |
0.202s |
passed |
| flagStatSparkLocalWithBigInterval |
0.185s |
passed |
| flagStatSparkLocalWithSmallInterval |
0.182s |
passed |
| testNoNPRWhenOutputIsUnspecified |
0.180s |
passed |
Standard output
19 in total
2 QC failure
0 duplicates
11 mapped (57.89%)
19 paired in sequencing
9 read1
10 read2
5 properly paired (26.32%)
5 with itself and mate mapped
6 singletons (31.58%)
0 with mate mapped to a different chr
0 with mate mapped to a different chr (mapQ>=5)
11 in total
0 QC failure
0 duplicates
11 mapped (100.00%)
11 paired in sequencing
3 read1
8 read2
5 properly paired (45.45%)
5 with itself and mate mapped
6 singletons (54.55%)
0 with mate mapped to a different chr
0 with mate mapped to a different chr (mapQ>=5)
2 in total
0 QC failure
0 duplicates
2 mapped (100.00%)
2 paired in sequencing
1 read1
1 read2
2 properly paired (100.00%)
2 with itself and mate mapped
0 singletons (0.00%)
0 with mate mapped to a different chr
0 with mate mapped to a different chr (mapQ>=5)
19 in total
2 QC failure
0 duplicates
11 mapped (57.89%)
19 paired in sequencing
9 read1
10 read2
5 properly paired (26.32%)
5 with itself and mate mapped
6 singletons (31.58%)
0 with mate mapped to a different chr
0 with mate mapped to a different chr (mapQ>=5)
Standard error
[March 28, 2025 at 10:44:58 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.FlagStatSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:59 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.FlagStatSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:59 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.FlagStatSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:44:59 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.FlagStatSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000