Class org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines.metrics > CollectQualityYieldMetricsSparkIntegrationTest
8

tests
0

failures
0

ignored
1.027s

duration
100%

successful

Tests

Test Duration Result
test[0](valid.bam, valid.CollectQualityYieldMetrics.txt, null, true) 0.176s passed
test[1](valid.cram, valid.CollectQualityYieldMetrics.txt, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectQualityYieldMetrics/valid.fasta, true) 0.158s passed
test[2](collect_quality_yield_metrics.sam, collect_quality_yield_metrics.originalquals.txt, null, true) 0.093s passed
test[3](collect_quality_yield_metrics.sam, collect_quality_yield_metrics.quals.txt, null, false) 0.098s passed
test[4](collect_quality_yield_metrics.dictFix.sam, collect_quality_yield_metrics.originalquals.txt, null, true) 0.102s passed
test[5](collect_quality_yield_metrics.dictFix.sam, collect_quality_yield_metrics.quals.txt, null, false) 0.090s passed
test[6](collect_quality_yield_metrics.dictFix.cram, collect_quality_yield_metrics.originalquals.txt, /home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19_chr1_1M.fasta, true) 0.158s passed
test[7](collect_quality_yield_metrics.dictFix.cram, collect_quality_yield_metrics.quals.txt, /home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19_chr1_1M.fasta, false) 0.152s passed

Standard error

[March 28, 2025 at 10:46:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:46:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:46:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[March 28, 2025 at 10:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000