Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.254s |
passed |
| testASEReadCounterImproperPairs |
3.119s |
passed |
| testASEReadCounterMinDepth70 |
0.192s |
passed |
| testASEReadCounterMultipleContexts |
0.123s |
passed |
| testASEReadCounterNonRefAllele |
0.123s |
passed |
| testASEReadCounterWarnings |
0.195s |
passed |
| testASEReadCounterWithCountOverlaps |
0.190s |
passed |
| testASEReadCounterWithCountReads |
0.189s |
passed |
| testASEReadCounterWithHighMQ |
0.187s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.186s |
passed |
| testASEReadCounterWithLowMQ |
0.193s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.198s |
passed |
Standard output
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[22:52:35] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[22:52:35] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[22:52:38] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[22:52:39] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[22:52:39] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[22:52:39] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[22:52:39] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[22:52:39] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[22:52:40] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[March 28, 2025 at 10:52:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:38 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:38 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:38 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880
[March 28, 2025 at 10:52:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1447034880