Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.690s |
passed |
| testSplitsFixNDN |
0.079s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.408s |
passed |
| testSplitsTargetRegionFunctionality |
0.273s |
passed |
| testSplitsWithOverhangs |
0.362s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.316s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.290s |
passed |
| testSplitsWithOverhangsNotClipping |
0.309s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.410s |
passed |
Standard output
--------------------------------------------------------------------------------
[22:53:06] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
--------------------------------------------------------------------------------
[22:53:06] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[22:53:07] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[22:53:08] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
--------------------------------------------------------------------------------
[22:53:08] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
--------------------------------------------------------------------------------
[22:53:08] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
--------------------------------------------------------------------------------
[22:53:09] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[22:53:09] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[March 28, 2025 at 10:53:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:53:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:53:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:53:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:53:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:53:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:53:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:53:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=736100352
[March 28, 2025 at 10:53:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=736100352