Class org.broadinstitute.hellbender.tools.walkers.sv.JointGermlineCNVSegmentationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.sv > JointGermlineCNVSegmentationIntegrationTest
3

tests
0

failures
0

ignored
0.766s

duration
100%

successful

Tests

Test Duration Result
testDefragmentation 0.307s passed
testOverlappingEvents[0]([src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/HG00365.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/HG01623.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/HG01789.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/HG02165.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/HG02221.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA07357.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA11829.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA12005.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA12046.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA12814.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA12873.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA18946.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA18997.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA19428.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA19456.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA20502.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA21120.overlaps.vcf.gz, src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation/NA00000.overlaps.vcf]) 0.205s passed
testThreeGCNVSamples[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/segments_output_SAMPLE_000.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/segments_output_SAMPLE_001.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/segments_output_SAMPLE_002.vcf], 6, 7) 0.254s passed

Standard error

[March 28, 2025 at 10:53:16 PM UTC] org.broadinstitute.hellbender.tools.walkers.sv.JointGermlineCNVSegmentation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=736100352
[March 28, 2025 at 10:53:16 PM UTC] org.broadinstitute.hellbender.tools.walkers.sv.JointGermlineCNVSegmentation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=736100352
[March 28, 2025 at 10:53:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.sv.JointGermlineCNVSegmentation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=736100352
[March 28, 2025 at 10:53:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.sv.JointGermlineCNVSegmentation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=736100352
[March 28, 2025 at 10:53:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.sv.JointGermlineCNVSegmentation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=736100352