Class org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariantsIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.variantutils > SelectVariantsIntegrationTest
88

tests
0

failures
0

ignored
6.253s

duration
100%

successful

Tests

Test Duration Result
testAlleleTrimming 0.070s passed
testCombineInfoAndGenotypeJexl 0.072s passed
testComplexSelection 0.072s passed
testComplexSelectionWithNonExistingSamples 0.066s passed
testConcordance 0.068s passed
testDiscordance 0.066s passed
testDropAnnotations[0](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894, testSelectVariants_DropAnnotations.vcf, standard) 0.066s passed
testDropAnnotations[1](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -DA NotAnAnnotation -DGA AlsoNotAnAnnotation, testSelectVariants_DropAnnotations.vcf, unused_annotations) 0.066s passed
testDropAnnotations[2](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'FisherStrand > 10.0', testSelectVariants_DropAnnotationsSelectFisherStrand.vcf, select_on_dropped_annotation) 0.067s passed
testDropAnnotations[3](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'RMSMAPQ > 175.0', testSelectVariants_DropAnnotationsSelectRMSMAPQ.vcf, select_on_kept_annotation) 0.066s passed
testDropAnnotations[4](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getExtendedAttribute("RD")>6', testSelectVariants_DropAnnotationsSelectRD.vcf, select_on_dropped_genotype_annotation) 0.076s passed
testDropAnnotations[5](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getGQ()==1', testSelectVariants_DropAnnotationsSelectGQ.vcf, select_on_kept_genotype_annotation) 0.071s passed
testEmptyVcfException 0.066s passed
testExcludeSelectionIDFromFile 0.088s passed
testExcludeSelectionIDLiteral 0.087s passed
testExcludeSelectionType 0.077s passed
testExpressionSelection 0.079s passed
testFORMATFieldGivenToSelect 0.077s passed
testFileWithoutInfoLineInHeader 0.072s passed
testFileWithoutInfoLineInHeaderWithOverride 0.069s passed
testHaploid 0.070s passed
testINFOFieldGivenToSelectGenotype 0.071s passed
testInvalidJexl 0.069s passed
testInvertJexlSelection 0.068s passed
testInvertMendelianViolationSelection 0.075s passed
testInvertSelection 0.074s passed
testJEXLFilterFirst 0.142s passed
testJexlDirectlyAccessGenotype 0.069s passed
testJexlGenotypeFilter 0.069s passed
testKeepOriginalAC 0.067s passed
testKeepOriginalACAndENV 0.068s passed
testKeepOriginalDP 0.071s passed
testKeepSelectionIDFromFile 0.066s passed
testKeepSelectionIDLiteral 0.065s passed
testLogicalAndOrInJexl 0.069s passed
testManyAllelicWithoutPLsDoesntFreeze 0.077s passed
testMaxFilteredGenotypesSelection 0.068s passed
testMaxFractionFilteredGenotypesSelection 0.066s passed
testMaxIndelLengthSelection 0.065s passed
testMaxNoCall0_25 0.065s passed
testMaxNoCall0_5 0.064s passed
testMaxNoCall1 0.065s passed
testMaxNoCall2 0.065s passed
testMendelianViolationSelection 0.073s passed
testMinFilteredGenotypesSelection 0.073s passed
testMinFractionFilteredGenotypesSelection 0.067s passed
testMinIndelLengthSelection 0.066s passed
testMissingVcfException 0.063s passed
testMultiAllelicAnnotationOrdering 0.068s passed
testMultipleINFOJexls 0.070s passed
testMultipleRecordsAtOnePosition 0.064s passed
testNoGTs 0.064s passed
testNonExistentSampleFile 0.059s passed
testNonExistingFieldSelection 0.066s passed
testNotFileVcfException 0.062s passed
testOutputOnlyStartingInInterval 0.069s passed
testRemoveMLE 0.065s passed
testRemoveSingleSpanDelAllele 0.066s passed
testRemoveSingleSpanDelAlleleExNonVar 0.066s passed
testRemoveSingleSpanDelAlleleNoSpanDel 0.065s passed
testRepeatedLineSelectionAndExludeFiltered 0.077s passed
testResortingFileWarning 0.066s passed
testSACDiploid 0.073s passed
testSACNonDiploid 0.073s passed
testSACSimpleDiploid 0.070s passed
testSampleExclusionFromFileAndSeparateSample 0.072s passed
testSampleExclusionJustFromExpression 0.074s passed
testSampleExclusionJustFromFile 0.074s passed
testSampleExclusionJustFromNegationExpression 0.074s passed
testSampleInclusionWithNonexistingSamples 0.067s passed
testSampleSelection 0.070s passed
testSelectFromMultiAllelic 0.086s passed
testSelectRandomFraction 0.073s passed
testSetFilteredGtoNocall 0.068s passed
testSetFilteredGtoNocallUpdateInfo 0.069s passed
testTetraDiploid 0.068s passed
testTetraploid 0.069s passed
testUntrimmedVariants 0.068s passed
testUntrimmedVariantsWithSetFilteredGtToNocall 0.066s passed
testUnusedAlleleTrimming[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeftTrim.vcf) 0.066s passed
testUnusedAlleleTrimming[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, null, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeft.vcf) 0.068s passed
testUnusedAlleleTrimming[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCT.vcf) 0.074s passed
testUnusedAlleleTrimming[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTEnv.vcf) 0.074s passed
testUnusedAlleleTrimming[4](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrim.vcf) 0.067s passed
testUnusedAlleleTrimming[5](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrimAltEnv.vcf) 0.066s passed
testUseCorrectDPInJexl 0.141s passed
testVariantTypeSelection 0.062s passed
testVariantTypeSelectionForGVCF 0.063s passed

Standard output

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[22:55:04] Executing test SelectVariantsIntegrationTest:testAlleleTrimming
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[22:55:05] Executing test SelectVariantsIntegrationTest:testComplexSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:05] Executing test SelectVariantsIntegrationTest:testComplexSelectionWithNonExistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:05] Executing test SelectVariantsIntegrationTest:testConcordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:05] Executing test SelectVariantsIntegrationTest:testDiscordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:05] Executing test SelectVariantsIntegrationTest:testDropAnnotations--standard
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[22:55:05] Executing test SelectVariantsIntegrationTest:testDropAnnotations--unused_annotations
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[22:55:05] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_annotation
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[22:55:05] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_annotation
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[22:55:05] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_genotype_annotation
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[22:55:05] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_genotype_annotation
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[22:55:05] Executing test SelectVariantsIntegrationTest:testEmptyVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/reallyEmpty.vcf
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[22:55:05] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:05] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:05] Executing test SelectVariantsIntegrationTest:testExcludeSelectionType--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:06] Executing test SelectVariantsIntegrationTest:testSimpleExpressionSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteringDepthInFormat.vcf
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[22:55:06] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeader
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[22:55:06] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeaderWithOverride
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[22:55:06] Executing test SelectVariantsIntegrationTest:testHaploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/haploid-multisample.vcf
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[22:55:06] Executing test SelectVariantsIntegrationTest:InvalidJexl
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[22:55:06] Executing test SelectVariantsIntegrationTest:testInvertJexlSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:06] Executing test SelectVariantsIntegrationTest:testInvertMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[22:55:06] Executing test SelectVariantsIntegrationTest:testInvertSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testKeepOriginalAC--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testKeepOriginalACAndENV--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testKeepOriginalDP--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMaxFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMaxFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMaxIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_25--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_5--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMaxNoCall1--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMaxNoCall2--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[22:55:07] Executing test SelectVariantsIntegrationTest:testMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testMinFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testMinFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testMinIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testMissingVcfException--test.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:test multi allelic annotation ordering --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testMultipleRecordsAtOnePosition--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariants.onePosition.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testNoGTs--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcf4.1.example.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testNonExistentSampleFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testNonExistingSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:testNotFileVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/
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[22:55:08] Executing test SelectVariantsIntegrationTest:test that variant interval output filter mode is applied
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[22:55:08] Executing test SelectVariantsIntegrationTest:testRemoveMLE--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.withMLE.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:test removes variant line where '*' is only ALT allele --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[22:55:08] Executing test SelectVariantsIntegrationTest:test will not remove variant line where '*' is only ALT allele because --exclude-non-variants not called --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:test encounter no instance of '*' as only ALT allele and ensure line is removed when only monomorphic allele existssrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testRepeatedLineSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/test.dup.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSACDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/diploid-multisample-sac.g.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSACNonDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample-sac.g.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSACSimpleDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/261_S01_raw_variants_gvcf.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSampleExclusionFromFileAndSeparateSample--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromRegexExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSampleInclusionWithNonexistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:testSampleSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[22:55:09] Executing test SelectVariantsIntegrationTest:test select from multi allelic with exclude-non-variants --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic.bi-allelicInGIH.vcf
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[22:55:10] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocall--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[22:55:10] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocallUpdateInfo--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariantsInfoField.vcf
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[22:55:10] Executing test SelectVariantsIntegrationTest:testTetraDiploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetra-diploid.vcf
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[22:55:10] Executing test SelectVariantsIntegrationTest:testTetraploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample.vcf
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[22:55:10] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,--remove-unused-alternates)
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[22:55:10] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,(none))
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[22:55:10] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT)
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[22:55:10] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants)
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[22:55:10] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates)
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[22:55:10] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates)
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[22:55:11] Executing test SelectVariantsIntegrationTest:testVariantTypeSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[22:55:11] Executing test SelectVariantsIntegrationTest:testVariantTypeSelectionForGVCF--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/gvcfExample.g.vcf

Standard error

[March 28, 2025 at 10:55:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
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