Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.593s |
passed |
| testApplySNPRecalibration |
1.772s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.082s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.119s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.084s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.066s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.068s |
passed |
Standard output
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[22:55:16] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
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[22:55:17] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
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[22:55:19] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[22:55:19] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[22:55:19] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[22:55:19] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[March 28, 2025 at 10:55:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:18 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424
[March 28, 2025 at 10:55:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1178599424