Class org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest

all > org.broadinstitute.hellbender.engine > LocusWalkerByIntervalUnitTest
13

tests
0

failures
0

ignored
0.222s

duration
100%

successful

Tests

Test Duration Result
testOverlappingBasesCoverageInformation[0]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@3c320c8b, [I@4d23b242) 0.029s passed
testOverlappingBasesCoverageInformation[10]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@6ac49084, [I@10e542f3) 0.013s passed
testOverlappingBasesCoverageInformation[11]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@1f9b86f5, [I@15aa3084) 0.013s passed
testOverlappingBasesCoverageInformation[12]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@22a10b71, [I@d67f6f) 0.013s passed
testOverlappingBasesCoverageInformation[1]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@33e69162, [I@791b9887) 0.022s passed
testOverlappingBasesCoverageInformation[2]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@76bfecef, [I@661ec798) 0.015s passed
testOverlappingBasesCoverageInformation[3]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4e791e53, [I@2d4e6bb2) 0.014s passed
testOverlappingBasesCoverageInformation[4]([20:1000-2000, 20:2001-3000], [Lhtsjdk.samtools.util.Locatable;@7b0f5814, [I@4eef2522) 0.018s passed
testOverlappingBasesCoverageInformation[5]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@1405dd10, [I@30e29c0c) 0.016s passed
testOverlappingBasesCoverageInformation[6]([20:1000-2000, 21:3001-4000], [Lhtsjdk.samtools.util.Locatable;@6c18cf67, [I@74ed11d7) 0.016s passed
testOverlappingBasesCoverageInformation[7]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@7a5c502b, [I@265d72fd) 0.026s passed
testOverlappingBasesCoverageInformation[8]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@50a1c2f3, [I@453ca7f) 0.014s passed
testOverlappingBasesCoverageInformation[9]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@b38dc7d, [I@746cb25d) 0.013s passed

Standard error

22:32:02.312 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.312 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.312 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.312 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.312 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.312 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.312 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.312 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.313 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.313 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.313 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.313 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.313 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.313 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.313 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.313 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.313 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.315 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.315 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.315 INFO  ProgressMeter - Starting traversal
22:32:02.315 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.333 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.334 INFO  ProgressMeter -              20:1999              0.0                  1001        3336666.7
22:32:02.334 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.334 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.341 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.342 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.342 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.342 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.342 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.342 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.342 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.342 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.342 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.342 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.343 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.343 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.343 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.343 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.343 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.343 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.343 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.345 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.345 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.345 INFO  ProgressMeter - Starting traversal
22:32:02.345 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.356 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.357 INFO  ProgressMeter -              20:1999              0.0                  1001        5460000.0
22:32:02.357 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.357 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.366 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.366 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.366 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.366 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.366 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.366 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.366 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.366 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.366 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.366 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.366 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.367 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.367 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.367 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.367 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.367 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.367 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.368 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.368 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.368 INFO  ProgressMeter - Starting traversal
22:32:02.369 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.371 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.371 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
22:32:02.371 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.371 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.379 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.379 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.379 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.379 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.379 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.379 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.379 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.379 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.380 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.380 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.380 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.380 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.380 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.380 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.380 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.380 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.380 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.381 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.382 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.382 INFO  ProgressMeter - Starting traversal
22:32:02.382 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.386 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.386 INFO  ProgressMeter -              20:1999              0.0                  1001       15015000.0
22:32:02.386 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.386 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.394 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.394 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.394 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.394 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.394 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.394 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.394 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.394 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.394 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.394 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.395 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.395 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.395 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.395 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.395 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.395 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.395 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.396 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
22:32:02.397 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.397 INFO  ProgressMeter - Starting traversal
22:32:02.397 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.403 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.403 INFO  ProgressMeter -              20:2999              0.0                  2001       20010000.0
22:32:02.403 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
22:32:02.403 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.411 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.411 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.411 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.411 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.411 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.412 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.412 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.412 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.412 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.412 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.412 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.412 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.412 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.414 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
22:32:02.414 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.414 INFO  ProgressMeter - Starting traversal
22:32:02.414 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.420 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.420 INFO  ProgressMeter -              20:3999              0.0                  2001       20010000.0
22:32:02.420 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
22:32:02.420 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.428 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.428 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.428 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.428 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.428 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.429 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.429 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.429 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.429 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.429 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.429 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.429 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.429 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.429 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.429 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.429 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.429 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.431 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
22:32:02.431 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.431 INFO  ProgressMeter - Starting traversal
22:32:02.431 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.436 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.436 INFO  ProgressMeter -              21:3999              0.0                  2001       24012000.0
22:32:02.436 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
22:32:02.436 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.444 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.445 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.445 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.445 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.445 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.445 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.445 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.445 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.445 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.445 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.445 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.445 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.445 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.447 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
22:32:02.447 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.447 INFO  ProgressMeter - Starting traversal
22:32:02.447 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.462 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.463 INFO  ProgressMeter -              20:3999              0.0                  2001        8004000.0
22:32:02.463 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
22:32:02.463 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.471 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.471 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.471 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.471 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.471 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.471 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.471 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.471 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.472 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.472 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.472 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.472 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.472 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.472 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.472 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.472 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.472 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.473 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.474 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.474 INFO  ProgressMeter - Starting traversal
22:32:02.474 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.476 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.476 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
22:32:02.476 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.476 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.484 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.484 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.484 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.484 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.484 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.485 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.485 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.485 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.485 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.485 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.485 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.485 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.485 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.485 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.485 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.485 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.485 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.487 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.487 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.487 INFO  ProgressMeter - Starting traversal
22:32:02.487 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.489 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.489 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
22:32:02.489 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.489 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.497 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.497 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.497 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.497 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.497 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.497 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.497 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.497 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.498 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.498 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.498 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.498 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.498 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.498 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.498 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.498 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.498 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.499 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.499 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.499 INFO  ProgressMeter - Starting traversal
22:32:02.500 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.502 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.502 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
22:32:02.502 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.502 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.510 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.510 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.510 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.510 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.510 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.510 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.510 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.510 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.510 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.510 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.510 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.510 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.510 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.510 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.510 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.510 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.511 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.512 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.512 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.512 INFO  ProgressMeter - Starting traversal
22:32:02.513 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.515 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.515 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
22:32:02.515 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.516 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.523 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.523 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.524 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.524 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.524 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.524 INFO  TestTransformedLocusWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.524 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.524 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
22:32:02.524 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.524 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.524 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.524 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.524 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
22:32:02.524 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
22:32:02.524 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
22:32:02.524 INFO  TestTransformedLocusWalker - Requester pays: disabled
22:32:02.524 INFO  TestTransformedLocusWalker - Initializing engine
22:32:02.526 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
22:32:02.526 INFO  TestTransformedLocusWalker - Done initializing engine
22:32:02.526 INFO  ProgressMeter - Starting traversal
22:32:02.526 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
22:32:02.528 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
22:32:02.528 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
22:32:02.528 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
22:32:02.528 INFO  TestTransformedLocusWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600