Class org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest

all > org.broadinstitute.hellbender.engine > MultiplePassReadWalkerUnitTest
tests
failures
ignored
0.152s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testIntervalFiltering[0](/count_reads_sorted.bam)	0.015s	passed
testIntervalFiltering[1](/count_reads_sorted.cram)	0.019s	passed
testPassCounts[0](0)	0.007s	passed
testPassCounts[1](1)	0.007s	passed
testPassCounts[2](2)	0.009s	passed
testPassCounts[3](5)	0.010s	passed
testPassCounts[4](25)	0.014s	passed
testRejectAttemptToIndexNonIndexableInput[0](/count_reads.bam)	0.012s	passed
testRejectAttemptToIndexNonIndexableInput[1](/count_reads.sam)	0.011s	passed
testRejectAttemptToIndexNonIndexableInput[2](/count_reads.cram)	0.008s	passed
testTwoPass[0](/count_reads.bam)	0.008s	passed
testTwoPass[1](/count_reads.sam)	0.015s	passed
testTwoPass[2](/count_reads.cram)	0.017s	passed
Standard error

22:32:02.829 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.829 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.829 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.829 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.829 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.829 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.829 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.829 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.830 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.830 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.830 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.830 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.830 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.830 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.830 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.830 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.830 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.835 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
22:32:02.835 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.835 INFO  ProgressMeter - Starting traversal
22:32:02.835 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.837 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.838 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.838 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.838 INFO  ProgressMeter -             unmapped              0.0                    10         200000.0
22:32:02.838 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
22:32:02.838 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.844 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.844 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.844 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.844 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.844 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.844 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.844 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.844 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.844 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.844 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.844 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.844 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.845 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.845 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.845 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.845 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.845 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.850 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
22:32:02.850 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.850 INFO  ProgressMeter - Starting traversal
22:32:02.850 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.856 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.856 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.857 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.858 INFO  ProgressMeter -             unmapped              0.0                    10          85714.3
22:32:02.858 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
22:32:02.858 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.865 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.865 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.865 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.865 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.865 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.865 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.865 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.865 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.865 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.865 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.865 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.865 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.865 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.865 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.865 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.865 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.865 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.866 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.866 INFO  ProgressMeter - Starting traversal
22:32:02.866 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.866 INFO  ProgressMeter -             unmapped              0.0                     0              NaN
22:32:02.866 INFO  ProgressMeter - Traversal complete. Processed 0 total reads in 0.0 minutes.
22:32:02.866 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.871 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.871 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.871 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.871 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.871 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.871 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.871 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.871 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.871 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.871 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.871 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.871 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.871 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.871 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.871 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.871 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.871 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.872 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.872 INFO  ProgressMeter - Starting traversal
22:32:02.872 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.873 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.873 INFO  ProgressMeter -             unmapped              0.0                     8         480000.0
22:32:02.873 INFO  ProgressMeter - Traversal complete. Processed 8 total reads in 0.0 minutes.
22:32:02.873 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.879 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.879 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.879 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.880 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.880 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.880 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.880 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.880 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.880 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.880 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.880 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.880 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.880 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.880 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.880 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.880 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.880 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.881 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.881 INFO  ProgressMeter - Starting traversal
22:32:02.881 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.881 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.881 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.881 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.881 INFO  ProgressMeter -             unmapped              0.0                    16         Infinity
22:32:02.881 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
22:32:02.881 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.889 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.889 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.889 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.889 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.889 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.889 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.889 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.889 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.889 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.889 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.889 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.889 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.889 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.889 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.889 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.889 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.889 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.890 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.890 INFO  ProgressMeter - Starting traversal
22:32:02.890 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.890 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.890 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.891 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.891 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
22:32:02.891 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.891 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
22:32:02.891 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.891 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
22:32:02.892 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.892 INFO  ProgressMeter -             unmapped              0.0                    40        1200000.0
22:32:02.892 INFO  ProgressMeter - Traversal complete. Processed 40 total reads in 0.0 minutes.
22:32:02.892 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.900 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.900 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.900 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.900 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.900 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.900 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.900 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.900 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.900 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.900 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.900 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.900 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.900 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.900 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.900 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.900 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.900 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.901 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.901 INFO  ProgressMeter - Starting traversal
22:32:02.901 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.901 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.901 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.902 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.902 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
22:32:02.902 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.902 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
22:32:02.902 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.902 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
22:32:02.902 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.902 INFO  dummyMultiplePassReadWalker - Starting traversal pass 6
22:32:02.902 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.902 INFO  dummyMultiplePassReadWalker - Starting traversal pass 7
22:32:02.903 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.903 INFO  dummyMultiplePassReadWalker - Starting traversal pass 8
22:32:02.903 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.903 INFO  dummyMultiplePassReadWalker - Starting traversal pass 9
22:32:02.903 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.903 INFO  dummyMultiplePassReadWalker - Starting traversal pass 10
22:32:02.903 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.903 INFO  dummyMultiplePassReadWalker - Starting traversal pass 11
22:32:02.903 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.903 INFO  dummyMultiplePassReadWalker - Starting traversal pass 12
22:32:02.903 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.903 INFO  dummyMultiplePassReadWalker - Starting traversal pass 13
22:32:02.904 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.904 INFO  dummyMultiplePassReadWalker - Starting traversal pass 14
22:32:02.904 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.904 INFO  dummyMultiplePassReadWalker - Starting traversal pass 15
22:32:02.904 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.904 INFO  dummyMultiplePassReadWalker - Starting traversal pass 16
22:32:02.904 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.904 INFO  dummyMultiplePassReadWalker - Starting traversal pass 17
22:32:02.904 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.904 INFO  dummyMultiplePassReadWalker - Starting traversal pass 18
22:32:02.904 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.905 INFO  dummyMultiplePassReadWalker - Starting traversal pass 19
22:32:02.905 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.905 INFO  dummyMultiplePassReadWalker - Starting traversal pass 20
22:32:02.905 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.905 INFO  dummyMultiplePassReadWalker - Starting traversal pass 21
22:32:02.905 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.905 INFO  dummyMultiplePassReadWalker - Starting traversal pass 22
22:32:02.905 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.905 INFO  dummyMultiplePassReadWalker - Starting traversal pass 23
22:32:02.905 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.905 INFO  dummyMultiplePassReadWalker - Starting traversal pass 24
22:32:02.905 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.905 INFO  dummyMultiplePassReadWalker - Starting traversal pass 25
22:32:02.906 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.906 INFO  ProgressMeter -             unmapped              0.0                   200        2400000.0
22:32:02.906 INFO  ProgressMeter - Traversal complete. Processed 200 total reads in 0.0 minutes.
22:32:02.906 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.914 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.914 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.914 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.914 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.914 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.914 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.914 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.914 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.914 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.914 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.914 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.914 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.914 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.914 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.914 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.914 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.914 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.917 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
22:32:02.918 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.924 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.924 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.924 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.924 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.924 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.924 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.924 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.924 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.925 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.925 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.925 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.925 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.925 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.925 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.925 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.925 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.925 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.929 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
22:32:02.930 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.935 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.935 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.935 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.935 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.935 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.935 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.935 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.935 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.935 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.935 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.935 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.935 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.935 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.935 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.935 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.935 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.935 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.938 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
22:32:02.938 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.943 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.943 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.943 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.943 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.943 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.943 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.943 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.943 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.944 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.944 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.944 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.944 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.944 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.944 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.944 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.944 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.944 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.945 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.945 INFO  ProgressMeter - Starting traversal
22:32:02.946 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.946 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.946 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.946 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.946 INFO  ProgressMeter -             unmapped              0.0                    16         Infinity
22:32:02.946 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
22:32:02.946 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.953 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.953 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.953 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.953 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.953 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.954 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.954 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.954 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.954 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.956 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.956 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.956 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.956 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.956 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.956 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.956 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.956 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.958 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.958 INFO  ProgressMeter - Starting traversal
22:32:02.958 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.960 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.961 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.962 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.962 INFO  ProgressMeter -             unmapped              0.0                    16         240000.0
22:32:02.962 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
22:32:02.962 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
22:32:02.970 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.970 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
22:32:02.970 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
22:32:02.970 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1720-291 on Linux v6.8.0-1021-azure amd64
22:32:02.970 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
22:32:02.970 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 28, 2025 at 10:32:02 PM UTC
22:32:02.970 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.970 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
22:32:02.970 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:32:02.970 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:32:02.970 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:32:02.970 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:32:02.970 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
22:32:02.970 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
22:32:02.970 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
22:32:02.970 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
22:32:02.970 INFO  dummyMultiplePassReadWalker - Initializing engine
22:32:02.972 INFO  dummyMultiplePassReadWalker - Done initializing engine
22:32:02.972 INFO  ProgressMeter - Starting traversal
22:32:02.972 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
22:32:02.976 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.976 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
22:32:02.978 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

22:32:02.978 INFO  ProgressMeter -             unmapped              0.0                    16         160000.0
22:32:02.978 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
22:32:02.978 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 28, 2025 at 10:32:02 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600