| Test |
Duration |
Result |
| testAdd |
0.015s |
passed |
| testAddMaxCliqueLarge |
0.077s |
passed |
| testAddVaryPositions[0](10000, 20001, 12000, 22001, 14000, 24001, SINGLE_LINKAGE, 1) |
0.001s |
passed |
| testAddVaryPositions[1](10000, 20001, 12000, 22001, 14001, 24002, SINGLE_LINKAGE, 2) |
0.001s |
passed |
| testAddVaryPositions[2](10000, 20001, 12001, 22002, 14002, 24003, SINGLE_LINKAGE, 3) |
0s |
passed |
| testAddVaryPositions[3](10000, 20001, 11000, 21001, 12000, 22001, MAX_CLIQUE, 1) |
0.001s |
passed |
| testAddVaryPositions[4](10000, 20001, 12000, 22001, 14000, 24001, MAX_CLIQUE, 2) |
0s |
passed |
| testAddVaryPositions[5](10000, 20001, 12001, 22002, 14002, 24003, MAX_CLIQUE, 3) |
0.001s |
passed |
| testClusterTogether |
0s |
passed |
| testClusterTogetherCNVs |
0s |
passed |
| testClusterTogetherInsertedComplex[0](chr1, 1000, chr1, 1000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f2d57448], true) |
0s |
passed |
| testClusterTogetherInsertedComplex[1](chr1, 1010, chr1, 1010, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f2d861da], true) |
0s |
passed |
| testClusterTogetherInsertedComplex[2](chr1, 2000, chr1, 3000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f2d861da], false) |
0s |
passed |
| testClusterTogetherInsertedComplex[3](chr1, 1000, chr1, 1000, dDUP_iDEL, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f2d57448], false) |
0.001s |
passed |
| testClusterTogetherInsertedComplex[4](chr1, 1000, chr1, 1000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f302dd48], false) |
0s |
passed |
| testClusterTogetherInsertedComplex[5](chr1, 1000, chr1, 1000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f067121b], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[0](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bcd0b1e7, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f023aa3f], true) |
0s |
passed |
| testClusterTogetherIntervaledComplex[1](chr1, 1100, chr1, 1900, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bcd173a7, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f02459d5], true) |
0s |
passed |
| testClusterTogetherIntervaledComplex[2](chr2, 1000, chr2, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bcd0b1e7, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f023aa3f], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[3](chr1, 1600, chr1, 2400, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bcd0b1e7, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f023aa3f], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[4](chr1, 1000, chr1, 2000, delINVdel, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bcd0b1e7, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f023aa3f], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[5](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bcd0b1e7], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[6](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bccc1b4b, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f023aa3f], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[7](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@bcd0b1e7, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@f2920c6c], false) |
0s |
passed |
| testClusterTogetherInvalidInterval |
0s |
passed |
| testClusterTogetherVaryAlgorithms |
0s |
passed |
| testClusterTogetherVaryContigs |
0s |
passed |
| testClusterTogetherVaryParameters |
0s |
passed |
| testClusterTogetherVaryPositions[0](500, 1001, 1001, 1502, false) |
0s |
passed |
| testClusterTogetherVaryPositions[10](1, 10001, 1, 10001, true) |
0s |
passed |
| testClusterTogetherVaryPositions[11](248946422, 248956422, 248946422, 248956422, true) |
0s |
passed |
| testClusterTogetherVaryPositions[12](100000, 200000, 101001, 201001, false) |
0s |
passed |
| testClusterTogetherVaryPositions[13](100000, 200000, 101000, 201000, true) |
0s |
passed |
| testClusterTogetherVaryPositions[1](500, 1001, 500, 1001, true) |
0s |
passed |
| testClusterTogetherVaryPositions[2](500, 1001, 600, 1101, true) |
0s |
passed |
| testClusterTogetherVaryPositions[3](500, 1001, 601, 1102, false) |
0s |
passed |
| testClusterTogetherVaryPositions[4](500, 1000, 600, 1101, false) |
0s |
passed |
| testClusterTogetherVaryPositions[5](500, 501, 500, 501, true) |
0s |
passed |
| testClusterTogetherVaryPositions[6](500, 501, 500, 502, false) |
0s |
passed |
| testClusterTogetherVaryPositions[7](500, 500, 500, 500, true) |
0s |
passed |
| testClusterTogetherVaryPositions[8](500, 500, 501, 501, false) |
0s |
passed |
| testClusterTogetherVaryPositions[9](1, 248956422, 1, 248956422, true) |
0s |
passed |
| testClusterTogetherVaryStrands |
0s |
passed |
| testClusterTogetherVaryTypes |
0.001s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[0](1000, 1000, 1000, 1000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[1](1000, 1000, 1000, 500, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[2](1000, 1000, 1000, 2000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[3](1000, 1000, 100, 1000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[4](1000, 1000, 1900, 1000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[5](1000, 1000, 99, 1000, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[6](1000, 1000, 1901, 1000, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[7](1000, 1000, 1000, 499, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[8](1000, 2001, 1000, 1000, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[0](1001, 2000, 1001, 2000, DEL, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[1](1001, 2000, 1501, 2000, DEL, true) |
0.001s |
passed |
| testClusterTogetherWithSizeSimilarity[2](1001, 2000, 1900, 2900, DEL, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[3](1001, 2000, 1502, 2000, DEL, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[4](1001, 2000, 1901, 2399, DEL, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[5](1001, 2000, 1902, 2900, DEL, false) |
0s |
passed |
| testCollapser |
0.011s |
passed |
| testGetCarrierSamplesBiallelic[0](0, null, null, [I@2d260f2a, [Ljava.lang.String;@79ac02a9) |
0.002s |
passed |
| testGetCarrierSamplesBiallelic[10](2, N*, <DEL>, [I@21c8dd3e, [Ljava.lang.String;@585d570e) |
0s |
passed |
| testGetCarrierSamplesBiallelic[11](2, N*, <DEL>, [I@247246ea, [Ljava.lang.String;@43b45e77) |
0.001s |
passed |
| testGetCarrierSamplesBiallelic[12](2, N*, <DEL>, [I@26c9225a, [Ljava.lang.String;@10ba757f) |
0s |
passed |
| testGetCarrierSamplesBiallelic[13](2, N*, <DUP>, [I@1cb3de26, [Ljava.lang.String;@7307e418) |
0s |
passed |
| testGetCarrierSamplesBiallelic[14](2, N*, <DUP>, [I@2769d577, [Ljava.lang.String;@25297d52) |
0s |
passed |
| testGetCarrierSamplesBiallelic[15](3, N*, <DEL>, [I@72b8b04f, [Ljava.lang.String;@1b131102) |
0.001s |
passed |
| testGetCarrierSamplesBiallelic[16](3, N*, <DEL>, [I@3bc57af4, [Ljava.lang.String;@3f19f197) |
0s |
passed |
| testGetCarrierSamplesBiallelic[1](0, null, <DEL>, [I@340d50c8, [Ljava.lang.String;@9cabd07) |
0s |
passed |
| testGetCarrierSamplesBiallelic[2](0, N*, null, [I@7942987, [Ljava.lang.String;@5941a2ad) |
0s |
passed |
| testGetCarrierSamplesBiallelic[3](0, ., null, [I@3ac60eeb, [Ljava.lang.String;@1c38d025) |
0s |
passed |
| testGetCarrierSamplesBiallelic[4](0, ., <DEL>, [I@350a3df3, [Ljava.lang.String;@3f31ccef) |
0s |
passed |
| testGetCarrierSamplesBiallelic[5](0, N*, <DEL>, [I@6f0ea5de, [Ljava.lang.String;@b0ff869) |
0s |
passed |
| testGetCarrierSamplesBiallelic[6](0, N*, <DEL>, [I@4b9da2f0, [Ljava.lang.String;@5127de08) |
0s |
passed |
| testGetCarrierSamplesBiallelic[7](1, N*, <DEL>, [I@5f571d96, [Ljava.lang.String;@797bbeae) |
0s |
passed |
| testGetCarrierSamplesBiallelic[8](1, N*, <DEL>, [I@4e43a23a, [Ljava.lang.String;@291fbdc9) |
0s |
passed |
| testGetCarrierSamplesBiallelic[9](2, N*, <DEL>, [I@4bfaa7b, [Ljava.lang.String;@57be9aa4) |
0s |
passed |
| testGetClusteringIntervalEdge |
0s |
passed |
| testGetClusteringIntervalLists |
0s |
passed |
| testGetMaxClusterableStartingPosition[0](100, 200) |
0.001s |
passed |
| testGetMaxClusterableStartingPosition[1](50000, 500000) |
0s |
passed |
| testGetMaxClusterableStartingPosition[2](1, 1) |
0s |
passed |
| testGetMaxClusterableStartingPosition[3](1, 2) |
0s |
passed |
| testIsDepthOnlyCall |
0s |
passed |
| testLargeRandom |
0.673s |
passed |
| testMatchCNVNoGT[0](0, [I@3b6f7ab3, [I@2eab279, true) |
0.001s |
passed |
| testMatchCNVNoGT[10](2, [I@5858054c, [I@28ea7f58, false) |
0s |
passed |
| testMatchCNVNoGT[11](2, [I@14c6d1b7, [I@c2cc406, false) |
0s |
passed |
| testMatchCNVNoGT[12](2, [I@664c6bbc, [I@442545ab, false) |
0s |
passed |
| testMatchCNVNoGT[1](0, [I@10982760, [I@50626d22, true) |
0s |
passed |
| testMatchCNVNoGT[2](1, [I@734db023, [I@22bf2a0d, true) |
0s |
passed |
| testMatchCNVNoGT[3](2, [I@57e351a, [I@1b2c513e, true) |
0s |
passed |
| testMatchCNVNoGT[4](2, [I@1b74a062, [I@6f5690f3, true) |
0s |
passed |
| testMatchCNVNoGT[5](2, [I@11ed241c, [I@2f24e1f3, false) |
0s |
passed |
| testMatchCNVNoGT[6](2, [I@36aacc46, [I@4e1fd34b, false) |
0.001s |
passed |
| testMatchCNVNoGT[7](2, [I@43f81c74, [I@23d030b1, true) |
0s |
passed |
| testMatchCNVNoGT[8](2, [I@31bbcced, [I@32a37d12, true) |
0s |
passed |
| testMatchCNVNoGT[9](2, [I@2adb532c, [I@45682e3e, false) |
0s |
passed |