Class org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeffUnitTest
Tests
| Test |
Duration |
Result |
| compareOldWithReblocked |
0.001s |
passed |
| testAllHetsForLargeCohorts |
1.391s |
passed |
| testEmptyIfNoGenotypes |
0.001s |
passed |
| testInbreedingCoeffForMultiallelicVC |
0s |
passed |
| testInbreedingCoeffForMultiallelicVC_AS |
0.005s |
passed |
| testInbreedingCoeffForMultiallelicVC_refAltFlip |
0s |
passed |
| testInbreedingCoeffForMultiallelicVC_usingFounders |
0s |
passed |
| testInbreedingCoeffForMultiallelicVC_usingPedigreeFile |
0.001s |
passed |
| testLabels |
0s |
passed |
| testLabels_AS |
0.001s |
passed |
| testLargeCohorts |
1.004s |
passed |
| testRoundingIsntAppliedToEachGenotype |
0.001s |
passed |
| testSingletonVsCommonAllele |
0.005s |
passed |
| testSingletonVsCommonAllele_refAltFlip |
0.005s |
passed |
| testTinyCohorts_AS |
0s |
passed |
Standard error
22:40:04.858 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
22:40:04.858 DEBUG GenomeLocParser - 1 (16000 bp)
22:40:04.858 DEBUG GenomeLocParser - 2 (16000 bp)
22:40:04.858 DEBUG GenomeLocParser - 3 (16000 bp)
22:40:04.858 DEBUG GenomeLocParser - 4 (16000 bp)
22:40:05.781 DEBUG ContextCleaner - Got cleaning task CleanShuffle(10)
22:40:05.781 DEBUG ContextCleaner - Cleaning shuffle 10
22:40:05.782 DEBUG ContextCleaner - Cleaned shuffle 10
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1117)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1117
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1117
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1066)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1066
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1066
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1064)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1064
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1064
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1110)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1110
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1110
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1131)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1131
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1131
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1137)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1137
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1137
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1112)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1112
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1112
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1080)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1080
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1080
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1114)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1114
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1114
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1090)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1090
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1090
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1071)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1071
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1071
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1097)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1097
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1097
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1143)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1143
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1143
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1078)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1078
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1078
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1146)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1146
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1146
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1088)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1088
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1088
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1096)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1096
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1096
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1101)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1101
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1101
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1124)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1124
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1124
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1079)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1079
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1079
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1063)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1063
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1063
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1106)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1106
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1106
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1087)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1087
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1087
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1103)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1103
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1103
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1153)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1153
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1153
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1102)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1102
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1102
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1059)
22:40:05.782 DEBUG ContextCleaner - Cleaning accumulator 1059
22:40:05.782 DEBUG ContextCleaner - Cleaned accumulator 1059
22:40:05.782 DEBUG ContextCleaner - Got cleaning task CleanAccum(1125)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1125
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1125
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1076)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1076
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1076
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1129)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1129
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1129
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1086)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1086
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1086
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1142)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1142
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1142
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1134)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1134
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1134
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1151)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1151
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1151
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1060)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1060
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1060
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1136)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1136
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1136
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1054)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1054
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1054
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1073)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1073
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1073
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1132)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1132
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1132
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1057)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1057
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1057
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1067)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1067
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1067
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1099)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1099
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1099
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1121)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1121
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1121
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1113)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1113
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1113
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1091)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1091
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1091
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1109)
22:40:05.783 DEBUG ContextCleaner - Cleaning accumulator 1109
22:40:05.783 DEBUG ContextCleaner - Cleaned accumulator 1109
22:40:05.783 DEBUG ContextCleaner - Got cleaning task CleanAccum(1152)
22:40:05.783 DEBUG BlockManagerStorageEndpoint - removing shuffle 10
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1152
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1152
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1050)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1050
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1050
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1127)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1127
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1127
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1118)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1118
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1118
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1089)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1089
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1089
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1144)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1144
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1144
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1149)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1149
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1149
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1119)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1119
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1119
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1115)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1115
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1115
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1141)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1141
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1141
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1062)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1062
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1062
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1052)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1052
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1052
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1139)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1139
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1139
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1085)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1085
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1085
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1056)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1056
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1056
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1128)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1128
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1128
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1107)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1107
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1107
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1126)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1126
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1126
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1081)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1081
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1081
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1077)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1077
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1077
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1111)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1111
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1111
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1104)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1104
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1104
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1098)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1098
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1098
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1100)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1100
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1100
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1084)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1084
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1084
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1095)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1095
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1095
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1061)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1061
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1061
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1069)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1069
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1069
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1082)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1082
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1082
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1058)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1058
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1058
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1150)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1150
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1150
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1083)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1083
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1083
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1130)
22:40:05.785 DEBUG ContextCleaner - Cleaning accumulator 1130
22:40:05.785 DEBUG ContextCleaner - Cleaned accumulator 1130
22:40:05.785 DEBUG ContextCleaner - Got cleaning task CleanAccum(1093)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1093
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1093
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1075)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1075
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1075
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1145)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1145
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1145
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1053)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1053
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1053
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1120)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1120
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1120
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1055)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1055
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1055
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1133)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1133
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1133
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1105)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1105
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1105
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1072)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1072
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1072
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1154)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1154
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1154
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1108)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1108
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1108
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1148)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1148
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1148
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1138)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1138
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1138
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1147)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1147
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1147
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1068)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1068
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1068
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1123)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1123
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1123
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1140)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1140
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1140
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1051)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1051
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1051
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1122)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1122
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1122
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1074)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1074
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1074
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1116)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1116
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1116
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1065)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1065
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1065
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1092)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1092
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1092
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1070)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1070
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1070
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1094)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1094
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1094
22:40:05.786 DEBUG ContextCleaner - Got cleaning task CleanAccum(1135)
22:40:05.786 DEBUG ContextCleaner - Cleaning accumulator 1135
22:40:05.786 DEBUG ContextCleaner - Cleaned accumulator 1135
22:40:05.800 DEBUG BlockManagerStorageEndpoint - Done removing shuffle 10, response is true
22:40:05.800 DEBUG BlockManagerStorageEndpoint - Sent response: true to localhost:46791
22:40:06.252 WARN InbreedingCoeff - InbreedingCoeff will not be calculated at position null:0 and possibly subsequent; at least 10 samples must have called genotypes
22:40:06.260 INFO PedReader - Phenotype is other? false