Class org.broadinstitute.hellbender.tools.walkers.annotator.VariantOverlapAnnotatorUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > VariantOverlapAnnotatorUnitTest
193

tests
0

failures
0

ignored
0.497s

duration
100%

successful

Tests

Test Duration Result
testAnnotateOverlapsEmpty[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlapsEmpty[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlapsEmpty[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlapsEmpty[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.001s passed
testAnnotateOverlapsEmpty[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateOverlapsEmpty[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateOverlapsEmpty[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.001s passed
testAnnotateOverlapsEmpty[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateOverlapsEmpty[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateOverlapsEmpty[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.009s passed
testAnnotateOverlapsFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testAnnotateOverlapsFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.006s passed
testAnnotateOverlapsFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testAnnotateOverlapsFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.006s passed
testAnnotateOverlapsFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.003s passed
testAnnotateOverlapsFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.007s passed
testAnnotateOverlapsFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.008s passed
testAnnotateOverlapsFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.006s passed
testAnnotateOverlapsFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlaps[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.001s passed
testAnnotateOverlaps[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlaps[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.001s passed
testAnnotateOverlaps[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0s passed
testAnnotateOverlaps[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.002s passed
testAnnotateOverlaps[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlaps[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateOverlaps[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateOverlaps[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.001s passed
testAnnotateOverlaps[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateOverlaps[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlaps[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateOverlaps[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateRsID[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateRsID[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0s passed
testAnnotateRsID[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateRsID[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateRsID[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateRsID[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.001s passed
testAnnotateRsID[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateRsID[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateRsID[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.001s passed
testAnnotateRsID[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testCreateWithSpecialNames 0s passed
testRsIDFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.003s passed
testRsIDFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.003s passed
testRsIDFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.003s passed
testRsIDFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.003s passed
testRsIDFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.003s passed
testRsIDFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.003s passed
testRsIDFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testRsIDFeatureContextWithNoDBSnP[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.002s passed
testRsIDFeatureContextWithNoDBSnP[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testRsIDFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.003s passed
testRsIDFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testRsIDFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.005s passed
testRsIDFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.004s passed
testRsIDFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.006s passed
testRsIDFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.005s passed
testRsIDFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed

Standard error

22:40:07.970 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
22:40:07.970 DEBUG GenomeLocParser -  1 (16000 bp)
22:40:07.970 DEBUG GenomeLocParser -  2 (16000 bp)
22:40:07.970 DEBUG GenomeLocParser -  3 (16000 bp)
22:40:07.970 DEBUG GenomeLocParser -  4 (16000 bp)
22:40:07.989 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:07.992 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:07.996 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:07.998 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.001 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.003 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.007 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.010 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.014 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.016 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.018 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.023 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.027 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.028 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.031 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.033 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.035 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.038 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.042 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.044 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.047 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.049 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.051 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.053 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.056 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.057 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.060 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.063 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.066 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.069 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.071 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.074 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.077 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.078 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.081 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.082 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.085 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.086 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.089 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.091 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.093 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.095 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.097 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.099 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.101 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.103 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.105 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.106 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.109 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.111 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.114 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.115 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.118 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.120 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.122 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.124 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.126 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.128 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.130 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.132 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.135 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.136 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.139 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.140 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.143 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.144 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.147 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.149 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.151 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.153 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.155 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.157 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.159 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.161 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.163 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.164 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.167 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.168 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.171 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.173 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.175 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.177 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.181 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.183 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.185 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.187 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.190 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.192 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.194 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.196 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.199 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.201 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.203 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.205 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.207 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.209 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.219 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.222 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.225 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.227 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.230 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.232 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.234 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.236 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.239 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.241 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.244 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.247 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.250 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.252 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.256 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.258 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.261 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.263 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.266 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.268 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.271 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.272 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.275 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.276 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.278 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.280 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.283 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.285 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.288 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.289 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.292 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.293 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.295 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.297 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.299 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.301 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.303 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.304 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.306 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.308 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.310 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.311 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.313 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.315 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.317 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.318 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.321 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.322 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.325 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.326 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.328 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.329 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.332 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.333 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.335 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.336 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.339 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.340 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.342 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.343 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.345 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.347 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.349 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.350 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.353 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.354 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.356 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.358 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.360 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.362 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.364 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.365 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.367 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.368 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.370 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.371 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.373 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.374 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.376 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.377 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.379 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.380 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.382 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.383 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.385 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.386 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.388 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.389 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.391 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.392 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.394 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.396 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.399 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.400 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.402 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.404 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.406 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.407 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.409 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.411 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.413 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.414 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.416 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.417 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.419 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.421 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.422 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.424 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.425 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.427 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.429 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.430 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.432 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.433 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.435 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.437 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.438 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.440 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.443 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.444 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.447 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.449 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.452 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.453 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.455 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.457 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.459 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.460 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.462 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.463 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.465 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.466 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.468 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.470 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.471 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.473 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.474 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.476 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.478 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.479 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.481 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.482 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.484 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:40:08.486 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf