| Test |
Duration |
Result |
| testCreate[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp16345827465589551709.tar.gz, true, MODERATE) |
0.002s |
passed |
| testCreate[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp25549042258408709008.fasta, false, MODERATE) |
0s |
passed |
| testCreate[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp312688491958308518885.vcf, true, MINIMAL) |
0s |
passed |
| testCreate[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp43412774722855646985.fasta, false, MINIMAL) |
0.001s |
passed |
| testCreate[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp516693737655024339848.vcf, null, MINIMAL) |
0s |
passed |
| testCreate[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp62190789835305496535.xsv, false, null) |
0s |
passed |
| testCreate[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp715146913936357212603.vcf, null, null) |
0s |
passed |
| testGetDest[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp3866760023683420254.tar.gz, true, MODERATE) |
0.001s |
passed |
| testGetDest[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp210786824422185750410.fasta, false, MODERATE) |
0s |
passed |
| testGetDest[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp37589087593193393122.vcf, true, MINIMAL) |
0s |
passed |
| testGetDest[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp47909858984284558422.fasta, false, MINIMAL) |
0.001s |
passed |
| testGetDest[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp513547848770244133792.vcf, null, MINIMAL) |
0s |
passed |
| testGetDest[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp65950857295702965601.xsv, false, null) |
0s |
passed |
| testGetDest[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp716842748408402240519.vcf, null, null) |
0s |
passed |
| testGetSource[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4040557316531969190.tar.gz, true, MODERATE) |
0s |
passed |
| testGetSource[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp211739317342532152327.fasta, false, MODERATE) |
0.001s |
passed |
| testGetSource[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp318187968524054971229.vcf, true, MINIMAL) |
0s |
passed |
| testGetSource[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp44731169147529766946.fasta, false, MINIMAL) |
0s |
passed |
| testGetSource[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp55346214848021114785.vcf, null, MINIMAL) |
0.001s |
passed |
| testGetSource[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp617178932511907045159.xsv, false, null) |
0s |
passed |
| testGetSource[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp71382104029086953766.vcf, null, null) |
0s |
passed |
| testIsDoLogProgress[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp3857315208921922090.tar.gz, true, MODERATE) |
0s |
passed |
| testIsDoLogProgress[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp211484207663230986195.fasta, false, MODERATE) |
0s |
passed |
| testIsDoLogProgress[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp317535210018319221953.vcf, true, MINIMAL) |
0.001s |
passed |
| testIsDoLogProgress[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp414041805687550365367.fasta, false, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp51741938512901624005.vcf, null, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp64563885036165674957.xsv, false, null) |
0s |
passed |
| testIsDoLogProgress[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp712918439981024438215.vcf, null, null) |
0.001s |
passed |
| testIsOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4995431450347512233.tar.gz, true, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp213464873843730271798.fasta, false, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp315732566012940577918.vcf, true, MINIMAL) |
0.001s |
passed |
| testIsOverwriteExisting[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp43316150796024089448.fasta, false, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp518172861263653969084.vcf, null, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp65020013992455057995.xsv, false, null) |
0s |
passed |
| testIsOverwriteExisting[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp715185742529708503975.vcf, null, null) |
0s |
passed |
| testSetOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp5943783784478250827.tar.gz, false, MODERATE, false) |
0.001s |
passed |
| testSetOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp6473351352247033601.tar.gz, true, MODERATE, true) |
0s |
passed |
| testSetVerbosity[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17039555822294094691.tar.gz, true, MODERATE, MODERATE) |
0s |
passed |
| testSetVerbosity[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp8943683893134128662.tar.gz, true, MINIMAL, MINIMAL) |
0s |
passed |
| testSetVerbosity[2](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp12007628154424075213.tar.gz, true, SILENT, SILENT) |
0.001s |
passed |
| testSetVerbosity[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp11063787960682628662.tar.gz, true, VERBOSE, VERBOSE) |
0s |
passed |
| testSetVerbosity[4](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp11735434672095897802.tar.gz, true, null, MODERATE) |
0s |
passed |