Class org.broadinstitute.hellbender.utils.samples.SampleDBUnitTest

all > org.broadinstitute.hellbender.utils.samples > SampleDBUnitTest
14

tests
0

failures
0

ignored
0.004s

duration
100%

successful

Tests

Test Duration Result
getFamilies 0.001s passed
getFamily 0.001s passed
getFamilyIDs 0s passed
loadAndMergeConsistentData 0s passed
loadDuplicateData 0s passed
loadFamilyIDs 0.001s passed
loadInconsistentData 0s passed
loadNonExistentFile 0s passed
loadPEDFile 0s passed
loadPEDString 0s passed
testAddSamplesFromSampleNames 0s passed
testGetFounderIds 0s passed
testGetTrios 0.001s passed
testGetTriosMultipleKids 0s passed

Standard error

22:44:18.859 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
22:44:18.859 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
22:44:18.860 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
22:44:18.861 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
22:44:18.861 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
22:44:18.862 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
22:44:18.863 WARN  PedReader - Reading PED string: "fam1 kid 0   0   2 2" with missing fields: []
22:44:18.865 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
22:44:18.866 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []
22:44:18.866 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
22:44:18.867 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []