Class org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest

all > org.broadinstitute.hellbender.utils.spark > SparkUtilsUnitTest

tests

failures

ignored

6.350s

duration

95%

successful

Failed tests
Tests
Standard error

Failed tests

testPathExists

org.apache.hadoop.ipc.RemoteException(java.lang.NoClassDefFoundError): Could not initialize class org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol.getDescriptor(ClientNamenodeProtocolProtos.java)
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.getDescriptorForType(ClientNamenodeProtocolProtos.java)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:604)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:589)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:573)
	at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1227)
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1246)
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1169)
	at java.base/java.security.AccessController.doPrivileged(AccessController.java:712)
	at java.base/javax.security.auth.Subject.doAs(Subject.java:439)
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1953)
	at org.apache.hadoop.ipc.Server$Handler.run(Server.java:3203)

	at app//org.apache.hadoop.ipc.Client.getRpcResponse(Client.java:1584)
	at app//org.apache.hadoop.ipc.Client.call(Client.java:1529)
	at app//org.apache.hadoop.ipc.Client.call(Client.java:1426)
	at app//org.apache.hadoop.ipc.ProtobufRpcEngine2$Invoker.invoke(ProtobufRpcEngine2.java:258)
	at app//org.apache.hadoop.ipc.ProtobufRpcEngine2$Invoker.invoke(ProtobufRpcEngine2.java:139)
	at app/jdk.proxy3/jdk.proxy3.$Proxy61.getDatanodeReport(Unknown Source)
	at app//org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.lambda$getDatanodeReport$28(ClientNamenodeProtocolTranslatorPB.java:713)
	at app//org.apache.hadoop.ipc.internal.ShadedProtobufHelper.ipc(ShadedProtobufHelper.java:160)
	at app//org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getDatanodeReport(ClientNamenodeProtocolTranslatorPB.java:713)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base@17.0.6/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base@17.0.6/java.lang.reflect.Method.invoke(Method.java:568)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:437)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeMethod(RetryInvocationHandler.java:170)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invoke(RetryInvocationHandler.java:162)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeOnce(RetryInvocationHandler.java:100)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:366)
	at app/jdk.proxy3/jdk.proxy3.$Proxy62.getDatanodeReport(Unknown Source)
	at app//org.apache.hadoop.hdfs.DFSClient.datanodeReport(DFSClient.java:2134)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.waitActive(MiniDFSCluster.java:2869)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.waitActive(MiniDFSCluster.java:2920)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.startDataNodes(MiniDFSCluster.java:1848)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.initMiniDFSCluster(MiniDFSCluster.java:995)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.<init>(MiniDFSCluster.java:594)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster$Builder.build(MiniDFSCluster.java:533)
	at app//org.broadinstitute.hellbender.testutils.MiniClusterUtils.getMiniCluster(MiniClusterUtils.java:30)
	at app//org.broadinstitute.hellbender.testutils.MiniClusterUtils.getMiniCluster(MiniClusterUtils.java:38)
	at app//org.broadinstitute.hellbender.testutils.MiniClusterUtils.runOnIsolatedMiniCluster(MiniClusterUtils.java:74)
	at app//org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest.testPathExists(SparkUtilsUnitTest.java:82)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base@17.0.6/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base@17.0.6/java.lang.reflect.Method.invoke(Method.java:568)
	at app//org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
	at app//org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
	at app//org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
	at app//org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
	at app//org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
	at app//org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
	at app//org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
	at app//org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
	at java.base@17.0.6/java.util.ArrayList.forEach(ArrayList.java:1511)
	at app//org.testng.TestRunner.privateRun(TestRunner.java:829)
	at app//org.testng.TestRunner.run(TestRunner.java:602)
	at app//org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
	at app//org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
	at app//org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
	at app//org.testng.SuiteRunner.run(SuiteRunner.java:330)
	at app//org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
	at app//org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
	at app//org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
	at app//org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
	at app//org.testng.TestNG.runSuites(TestNG.java:1099)
	at app//org.testng.TestNG.run(TestNG.java:1067)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:153)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:95)
	at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:63)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base@17.0.6/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base@17.0.6/java.lang.reflect.Method.invoke(Method.java:568)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
	at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
	at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:92)
	at jdk.proxy1/jdk.proxy1.$Proxy4.stop(Unknown Source)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:200)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:132)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:103)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:63)
	at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:121)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
	at app//worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
	at app//worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)

Tests

Test	Duration	Result
testConvertHeaderlessHadoopBamShardToBam	0.004s	passed
testInvalidSort	1.400s	passed
testPathExists	1.564s	failed
testPutReadsWithSameNameInSamePartition[0](1, 1, 2, [I@11930206)	0.680s	passed
testPutReadsWithSameNameInSamePartition[10](20, 7, 5, [I@472fa87c)	0.080s	passed
testPutReadsWithSameNameInSamePartition[1](2, 2, 2, [I@3d181c03)	0.073s	passed
testPutReadsWithSameNameInSamePartition[2](3, 2, 2, [I@62422272)	0.077s	passed
testPutReadsWithSameNameInSamePartition[3](3, 3, 2, [I@404ff514)	0.080s	passed
testPutReadsWithSameNameInSamePartition[4](6, 2, 2, [I@6feb295f)	0.057s	passed
testPutReadsWithSameNameInSamePartition[5](6, 3, 2, [I@562b6417)	0.065s	passed
testPutReadsWithSameNameInSamePartition[6](6, 4, 2, [I@484a16a0)	0.061s	passed
testPutReadsWithSameNameInSamePartition[7](2, 2, 3, [I@42251255)	0.055s	passed
testPutReadsWithSameNameInSamePartition[8](3, 2, 10, [I@22502c6d)	0.055s	passed
testPutReadsWithSameNameInSamePartition[9](6, 4, 3, [I@2e366f8)	0.051s	passed
testReadsMustBeQueryGroupedToFixPartitions	0.002s	passed
testReadsPairsSpanningMultiplePartitions	0.353s	passed
testSortCoordinateSortMatchesHtsjdk	0.707s	passed
testSortQuerynameFixesPartitionBoundaries	0.342s	passed
testSortQuerynameSortMatchesHtsjdk	0.584s	passed
testSortUsingElementsAsKeys	0.060s	passed

Standard error

22:44:19.348 WARN  NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
22:44:20.920 WARN  MetricsConfig - Cannot locate configuration: tried hadoop-metrics2-namenode.properties,hadoop-metrics2.properties
22:44:21.045 WARN  AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret
22:44:21.116 WARN  AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret
22:44:21.532 WARN  AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret
22:44:21.632 WARN  DatanodeHttpServer - Got null for restCsrfPreventionFilter - will not do any filtering.
22:44:21.716 WARN  Server - IPC Server handler 0 on default port 41195, call Call#0 Retry#0 org.apache.hadoop.hdfs.server.protocol.DatanodeProtocol.versionRequest from localhost:60704 / 127.0.0.1:60704
java.lang.NoSuchMethodError: 'org.apache.hadoop.thirdparty.protobuf.Descriptors$FileDescriptor org.apache.hadoop.thirdparty.protobuf.Descriptors$FileDescriptor.internalBuildGeneratedFileFrom(java.lang.String[], org.apache.hadoop.thirdparty.protobuf.Descriptors$FileDescriptor[])'
	at org.apache.hadoop.security.proto.SecurityProtos.<clinit>(SecurityProtos.java:6581) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.protocol.proto.HdfsProtos.<clinit>(HdfsProtos.java:62533) ~[hadoop-hdfs-client-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.protocol.proto.DatanodeProtocolProtos.<clinit>(DatanodeProtocolProtos.java:35783) ~[hadoop-hdfs-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.protocol.proto.DatanodeProtocolProtos$DatanodeProtocolService.getDescriptor(DatanodeProtocolProtos.java:34977) ~[hadoop-hdfs-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.protocol.proto.DatanodeProtocolProtos$DatanodeProtocolService$2.getDescriptorForType(DatanodeProtocolProtos.java:34750) ~[hadoop-hdfs-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:604) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:589) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:573) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1227) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1246) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1169) ~[hadoop-common-3.4.0.jar:?]
	at java.base/java.security.AccessController.doPrivileged(AccessController.java:712) [?:?]
	at java.base/javax.security.auth.Subject.doAs(Subject.java:439) [?:?]
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1953) [hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$Handler.run(Server.java:3203) [hadoop-common-3.4.0.jar:?]
22:44:21.723 WARN  DataNode - Problem connecting to server: localhost/127.0.0.1:41195
22:44:21.836 WARN  Server - IPC Server handler 1 on default port 41195, call Call#1 Retry#0 org.apache.hadoop.hdfs.protocol.ClientProtocol.getDatanodeReport from localhost:60706 / 127.0.0.1:60706
java.lang.NoClassDefFoundError: Could not initialize class org.apache.hadoop.security.proto.SecurityProtos
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos.<clinit>(ClientNamenodeProtocolProtos.java) ~[hadoop-hdfs-client-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol.getDescriptor(ClientNamenodeProtocolProtos.java) ~[hadoop-hdfs-client-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.getDescriptorForType(ClientNamenodeProtocolProtos.java) ~[hadoop-hdfs-client-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:604) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:589) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:573) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1227) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1246) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1169) ~[hadoop-common-3.4.0.jar:?]
	at java.base/java.security.AccessController.doPrivileged(AccessController.java:712) [?:?]
	at java.base/javax.security.auth.Subject.doAs(Subject.java:439) [?:?]
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1953) [hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$Handler.run(Server.java:3203) [hadoop-common-3.4.0.jar:?]
22:44:21.840 WARN  Server - IPC Server handler 2 on default port 41195, call Call#2 Retry#0 org.apache.hadoop.hdfs.protocol.ClientProtocol.getDatanodeReport from localhost:60706 / 127.0.0.1:60706
java.lang.NoClassDefFoundError: Could not initialize class org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol.getDescriptor(ClientNamenodeProtocolProtos.java) ~[hadoop-hdfs-client-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.getDescriptorForType(ClientNamenodeProtocolProtos.java) ~[hadoop-hdfs-client-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:604) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:589) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:573) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1227) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1246) ~[hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1169) ~[hadoop-common-3.4.0.jar:?]
	at java.base/java.security.AccessController.doPrivileged(AccessController.java:712) [?:?]
	at java.base/javax.security.auth.Subject.doAs(Subject.java:439) [?:?]
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1953) [hadoop-common-3.4.0.jar:?]
	at org.apache.hadoop.ipc.Server$Handler.run(Server.java:3203) [hadoop-common-3.4.0.jar:?]
22:44:21.841 WARN  MiniDFSCluster - Tried waitActive() 2 time(s) and failed, giving up.  org.apache.hadoop.ipc.RemoteException(java.lang.NoClassDefFoundError): Could not initialize class org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol.getDescriptor(ClientNamenodeProtocolProtos.java)
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.getDescriptorForType(ClientNamenodeProtocolProtos.java)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:604)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:589)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:573)
	at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1227)
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1246)
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1169)
	at java.base/java.security.AccessController.doPrivileged(AccessController.java:712)
	at java.base/javax.security.auth.Subject.doAs(Subject.java:439)
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1953)
	at org.apache.hadoop.ipc.Server$Handler.run(Server.java:3203)

	at org.apache.hadoop.ipc.Client.getRpcResponse(Client.java:1584)
	at org.apache.hadoop.ipc.Client.call(Client.java:1529)
	at org.apache.hadoop.ipc.Client.call(Client.java:1426)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Invoker.invoke(ProtobufRpcEngine2.java:258)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Invoker.invoke(ProtobufRpcEngine2.java:139)
	at jdk.proxy3/jdk.proxy3.$Proxy61.getDatanodeReport(Unknown Source)
	at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.lambda$getDatanodeReport$28(ClientNamenodeProtocolTranslatorPB.java:713)
	at org.apache.hadoop.ipc.internal.ShadedProtobufHelper.ipc(ShadedProtobufHelper.java:160)
	at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getDatanodeReport(ClientNamenodeProtocolTranslatorPB.java:713)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:568)
	at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:437)
	at org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeMethod(RetryInvocationHandler.java:170)
	at org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invoke(RetryInvocationHandler.java:162)
	at org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeOnce(RetryInvocationHandler.java:100)
	at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:366)
	at jdk.proxy3/jdk.proxy3.$Proxy62.getDatanodeReport(Unknown Source)
	at org.apache.hadoop.hdfs.DFSClient.datanodeReport(DFSClient.java:2134)
	at org.apache.hadoop.hdfs.MiniDFSCluster.waitActive(MiniDFSCluster.java:2869)
	at org.apache.hadoop.hdfs.MiniDFSCluster.waitActive(MiniDFSCluster.java:2920)
	at org.apache.hadoop.hdfs.MiniDFSCluster.startDataNodes(MiniDFSCluster.java:1848)
	at org.apache.hadoop.hdfs.MiniDFSCluster.initMiniDFSCluster(MiniDFSCluster.java:995)
	at org.apache.hadoop.hdfs.MiniDFSCluster.<init>(MiniDFSCluster.java:594)
	at org.apache.hadoop.hdfs.MiniDFSCluster$Builder.build(MiniDFSCluster.java:533)
	at org.broadinstitute.hellbender.testutils.MiniClusterUtils.getMiniCluster(MiniClusterUtils.java:30)
	at org.broadinstitute.hellbender.testutils.MiniClusterUtils.getMiniCluster(MiniClusterUtils.java:38)
	at org.broadinstitute.hellbender.testutils.MiniClusterUtils.runOnIsolatedMiniCluster(MiniClusterUtils.java:74)
	at org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest.testPathExists(SparkUtilsUnitTest.java:82)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:568)
	at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
	at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
	at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
	at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
	at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
	at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
	at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
	at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
	at java.base/java.util.ArrayList.forEach(ArrayList.java:1511)
	at org.testng.TestRunner.privateRun(TestRunner.java:829)
	at org.testng.TestRunner.run(TestRunner.java:602)
	at org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
	at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
	at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
	at org.testng.SuiteRunner.run(SuiteRunner.java:330)
	at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
	at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
	at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
	at org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
	at org.testng.TestNG.runSuites(TestNG.java:1099)
	at org.testng.TestNG.run(TestNG.java:1067)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:153)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:95)
	at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:63)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:568)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
	at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
	at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:92)
	at jdk.proxy1/jdk.proxy1.$Proxy4.stop(Unknown Source)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:200)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:132)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:103)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:63)
	at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:121)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
	at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
	at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)

22:44:21.851 ERROR DataNode - Initialization failed for Block pool <registering> (Datanode Uuid unassigned) service to localhost/127.0.0.1:41195. Exiting. 
java.io.IOException: DN shut down before block pool connected
	at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.retrieveNamespaceInfo(BPServiceActor.java:276) ~[hadoop-hdfs-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.connectToNNAndHandshake(BPServiceActor.java:306) ~[hadoop-hdfs-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.run(BPServiceActor.java:889) [hadoop-hdfs-3.4.0.jar:?]
	at java.base/java.lang.Thread.run(Thread.java:833) [?:?]
22:44:21.851 WARN  DataNode - Ending block pool service for: Block pool <registering> (Datanode Uuid unassigned) service to localhost/127.0.0.1:41195
22:44:21.852 WARN  DataSetLockManager - not open lock leak check func
22:44:21.853 ERROR DataNode - Command processor encountered interrupt and exit.
22:44:21.853 WARN  DataNode - Ending command processor service for: Thread[Command processor,5,main]