Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
0.333s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.018s	passed
testGetCompatibleHeader	0.029s	passed
testGetConflictingHeader	0.026s	passed
testIteratorOverlapping	0.024s	passed
testNoDictionaryForAllInputs	0.023s	passed
testNoDictionaryForOneInput	0.026s	passed
testNoDictionaryForOnlyInput	0.019s	passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.018s	passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.020s	passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.021s	passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.022s	passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.024s	passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.017s	passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.021s	passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.025s	passed
Standard error

19:00:35.084 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.084 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.084 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.084 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.084 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.084 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.085 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.085 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.085 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.085 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.085 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.085 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.085 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.085 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.085 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.085 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.085 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.087 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
19:00:35.088 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.103 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.103 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.103 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.103 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.103 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.104 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.104 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.104 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.104 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.104 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.104 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.104 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.104 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.104 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.104 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.104 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.104 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.106 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
19:00:35.107 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
19:00:35.112 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.112 INFO  ProgressMeter - Starting traversal
19:00:35.112 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.116 INFO  ProgressMeter -             unmapped              0.0                    26         390000.0
19:00:35.116 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
19:00:35.116 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.137 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.138 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.138 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.138 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.138 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.138 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.138 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.138 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.138 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.138 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.138 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.138 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.138 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.138 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.138 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.138 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.138 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.139 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
19:00:35.141 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
19:00:35.142 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.159 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
19:00:35.159 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.159 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.160 INFO  TestMultiVariantWalkerIterator - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.160 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.160 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.160 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
19:00:35.160 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
19:00:35.160 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.160 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.160 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.160 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.160 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
19:00:35.160 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
19:00:35.160 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
19:00:35.160 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
19:00:35.160 INFO  TestMultiVariantWalkerIterator - Initializing engine
19:00:35.162 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
19:00:35.164 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
19:00:35.166 INFO  TestMultiVariantWalkerIterator - Done initializing engine
19:00:35.166 INFO  ProgressMeter - Starting traversal
19:00:35.166 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.167 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
19:00:35.167 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
19:00:35.167 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.184 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.184 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.184 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.184 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.184 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.185 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.185 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.185 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.185 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.185 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.185 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.185 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.185 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.185 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.185 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.185 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.185 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.187 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
19:00:35.188 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
19:00:35.190 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
19:00:35.190 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
19:00:35.190 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.210 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.210 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.210 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.210 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.210 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.210 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.210 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.210 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.210 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.210 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.211 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.211 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.211 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.211 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.211 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.211 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.211 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.212 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
19:00:35.214 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
19:00:35.215 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
19:00:35.215 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.215 INFO  ProgressMeter - Starting traversal
19:00:35.215 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.217 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
19:00:35.217 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
19:00:35.217 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.234 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.234 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.234 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.234 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.234 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.234 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.234 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.234 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.234 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.234 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.234 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.234 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.234 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.234 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.234 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.234 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.235 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.235 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
19:00:35.236 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
19:00:35.236 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.236 INFO  ProgressMeter - Starting traversal
19:00:35.236 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.237 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
19:00:35.237 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
19:00:35.237 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.251 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.251 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.251 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.251 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.251 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.251 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.251 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.251 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.251 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.251 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.252 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.252 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.252 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.252 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.252 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.252 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.252 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.253 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
19:00:35.254 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.254 INFO  ProgressMeter - Starting traversal
19:00:35.254 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.255 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
19:00:35.255 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
19:00:35.255 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.271 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.272 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.272 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.272 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.272 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.272 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.272 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.272 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.272 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.272 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.272 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.272 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.272 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.272 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.272 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.272 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.272 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.273 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
19:00:35.275 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.275 INFO  ProgressMeter - Starting traversal
19:00:35.275 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.275 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
19:00:35.275 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
19:00:35.275 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.291 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.291 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.291 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.291 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.292 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.292 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.292 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.292 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.292 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.292 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.292 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.292 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.292 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.292 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.292 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.292 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.292 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.293 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
19:00:35.294 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
19:00:35.295 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.295 INFO  ProgressMeter - Starting traversal
19:00:35.296 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.297 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
19:00:35.297 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
19:00:35.297 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.311 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.311 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.311 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.311 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.311 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.311 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.311 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.311 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.311 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.311 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.312 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.312 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.312 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.312 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.312 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.312 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.312 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.313 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
19:00:35.315 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
19:00:35.317 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.317 INFO  ProgressMeter - Starting traversal
19:00:35.317 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.318 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
19:00:35.319 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
19:00:35.319 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.339 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.339 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.339 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.339 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.339 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.339 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.339 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.339 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.339 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.339 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.340 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.340 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.340 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.340 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.340 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.340 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.340 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.341 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
19:00:35.342 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
19:00:35.342 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.342 INFO  ProgressMeter - Starting traversal
19:00:35.342 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.343 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
19:00:35.343 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
19:00:35.343 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.356 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.356 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.356 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.356 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.356 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.356 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.356 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.356 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.356 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.357 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.357 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.357 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.357 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.357 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.357 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.357 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.357 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.358 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
19:00:35.359 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
19:00:35.359 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.359 INFO  ProgressMeter - Starting traversal
19:00:35.359 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.360 INFO  ProgressMeter -             unmapped              0.0                     7         420000.0
19:00:35.360 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
19:00:35.360 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.374 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.374 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.374 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.374 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.374 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.374 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.374 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.374 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.374 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.375 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.375 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.375 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.375 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.375 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.375 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.375 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.375 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.376 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
19:00:35.377 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
19:00:35.379 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
19:00:35.379 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.379 INFO  ProgressMeter - Starting traversal
19:00:35.379 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.380 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
19:00:35.380 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
19:00:35.380 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480
19:00:35.401 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.401 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:00:35.401 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:00:35.401 INFO  TestMultiVariantWalker - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:00:35.401 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:00:35.401 INFO  TestMultiVariantWalker - Start Date/Time: May 19, 2025 at 7:00:35 PM GMT
19:00:35.401 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.401 INFO  TestMultiVariantWalker - ------------------------------------------------------------
19:00:35.402 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:00:35.402 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:00:35.402 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:00:35.402 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:00:35.402 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
19:00:35.402 INFO  TestMultiVariantWalker - Inflater: IntelInflater
19:00:35.402 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
19:00:35.402 INFO  TestMultiVariantWalker - Requester pays: disabled
19:00:35.402 INFO  TestMultiVariantWalker - Initializing engine
19:00:35.403 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
19:00:35.404 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
19:00:35.405 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
19:00:35.405 INFO  TestMultiVariantWalker - Done initializing engine
19:00:35.405 INFO  ProgressMeter - Starting traversal
19:00:35.405 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
19:00:35.406 INFO  ProgressMeter -             unmapped              0.0                     3         180000.0
19:00:35.406 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
19:00:35.406 INFO  TestMultiVariantWalker - Shutting down engine
[May 19, 2025 at 7:00:35 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1814036480