Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.121s |
passed |
| testMultiSampleBam |
0.125s |
passed |
| testUrlEncoding |
0.113s |
passed |
Standard error
19:03:14.866 INFO GetSampleName - ------------------------------------------------------------
19:03:14.866 INFO GetSampleName - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:03:14.866 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
19:03:14.866 INFO GetSampleName - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:03:14.866 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:03:14.867 INFO GetSampleName - Start Date/Time: May 19, 2025 at 7:03:14 PM GMT
19:03:14.867 INFO GetSampleName - ------------------------------------------------------------
19:03:14.867 INFO GetSampleName - ------------------------------------------------------------
19:03:14.867 INFO GetSampleName - HTSJDK Version: 4.2.0-7-gb6a1842-SNAPSHOT
19:03:14.867 INFO GetSampleName - Picard Version: 3.4.0
19:03:14.867 INFO GetSampleName - Built for Spark Version: 3.5.0
19:03:14.867 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:03:14.867 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:03:14.867 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:03:14.867 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:03:14.867 INFO GetSampleName - Deflater: IntelDeflater
19:03:14.867 INFO GetSampleName - Inflater: IntelInflater
19:03:14.867 INFO GetSampleName - GCS max retries/reopens: 20
19:03:14.867 INFO GetSampleName - Requester pays: disabled
19:03:14.867 INFO GetSampleName - Initializing engine
19:03:14.868 INFO GetSampleName - Done initializing engine
19:03:14.869 INFO ProgressMeter - Starting traversal
19:03:14.869 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
19:03:14.869 INFO ProgressMeter - unmapped 0.0 0 NaN
19:03:14.869 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
19:03:14.869 INFO GetSampleName - Shutting down engine
[May 19, 2025 at 7:03:14 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=622854144
[May 19, 2025 at 7:03:14 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=622854144
19:03:15.107 INFO GetSampleName - ------------------------------------------------------------
19:03:15.107 INFO GetSampleName - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:03:15.107 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
19:03:15.107 INFO GetSampleName - Executing as root@39b899212c20 on Linux v6.11.0-1014-azure amd64
19:03:15.108 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:03:15.108 INFO GetSampleName - Start Date/Time: May 19, 2025 at 7:03:15 PM GMT
19:03:15.108 INFO GetSampleName - ------------------------------------------------------------
19:03:15.108 INFO GetSampleName - ------------------------------------------------------------
19:03:15.108 INFO GetSampleName - HTSJDK Version: 4.2.0-7-gb6a1842-SNAPSHOT
19:03:15.108 INFO GetSampleName - Picard Version: 3.4.0
19:03:15.108 INFO GetSampleName - Built for Spark Version: 3.5.0
19:03:15.108 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:03:15.108 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:03:15.108 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:03:15.108 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:03:15.108 INFO GetSampleName - Deflater: IntelDeflater
19:03:15.108 INFO GetSampleName - Inflater: IntelInflater
19:03:15.108 INFO GetSampleName - GCS max retries/reopens: 20
19:03:15.109 INFO GetSampleName - Requester pays: disabled
19:03:15.109 INFO GetSampleName - Initializing engine
19:03:15.110 INFO GetSampleName - Done initializing engine
19:03:15.110 INFO ProgressMeter - Starting traversal
19:03:15.110 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
19:03:15.110 INFO ProgressMeter - unmapped 0.0 0 NaN
19:03:15.110 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
19:03:15.110 INFO GetSampleName - Shutting down engine
[May 19, 2025 at 7:03:15 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=622854144