Class org.broadinstitute.hellbender.tools.SplitReadsIntegrationTest
|
100%
successful |
Tests
Test | Duration | Result |
---|---|---|
testSplitReadsByReadGroup[0](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [], {=19}) | 0.110s | passed |
testSplitReadsByReadGroup[10](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [LB], {.whatever=19}) | 0.097s | passed |
testSplitReadsByReadGroup[11](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) | 0.154s | passed |
testSplitReadsByReadGroup[12](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) | 0.147s | passed |
testSplitReadsByReadGroup[13](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) | 0.189s | passed |
testSplitReadsByReadGroup[14](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [], {=19}) | 0.138s | passed |
testSplitReadsByReadGroup[15](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM], {.Momma=17, .Poppa=2}) | 0.190s | passed |
testSplitReadsByReadGroup[16](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [RG], {.0=17, .1=2}) | 0.194s | passed |
testSplitReadsByReadGroup[17](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [LB], {.whatever=19}) | 0.137s | passed |
testSplitReadsByReadGroup[18](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) | 0.192s | passed |
testSplitReadsByReadGroup[19](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) | 0.194s | passed |
testSplitReadsByReadGroup[1](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM], {.Momma=17, .Poppa=2}) | 0.125s | passed |
testSplitReadsByReadGroup[20](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) | 0.194s | passed |
testSplitReadsByReadGroup[21](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [], {=19}) | 0.093s | passed |
testSplitReadsByReadGroup[22](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM], {.Momma=17, .Poppa=2}) | 0.147s | passed |
testSplitReadsByReadGroup[23](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [RG], {.0=17, .1=2}) | 0.141s | passed |
testSplitReadsByReadGroup[24](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [LB], {.whatever=19}) | 0.092s | passed |
testSplitReadsByReadGroup[25](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) | 0.243s | passed |
testSplitReadsByReadGroup[26](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) | 0.147s | passed |
testSplitReadsByReadGroup[27](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) | 0.144s | passed |
testSplitReadsByReadGroup[28](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [], {=19}) | 0.091s | passed |
testSplitReadsByReadGroup[29](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM], {.Momma=17, .Poppa=2}) | 0.140s | passed |
testSplitReadsByReadGroup[2](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [RG], {.0=17, .1=2}) | 0.110s | passed |
testSplitReadsByReadGroup[30](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [RG], {.0=17, .1=2}) | 0.138s | passed |
testSplitReadsByReadGroup[31](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [LB], {.whatever=19}) | 0.095s | passed |
testSplitReadsByReadGroup[32](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) | 0.145s | passed |
testSplitReadsByReadGroup[33](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) | 0.147s | passed |
testSplitReadsByReadGroup[34](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) | 0.189s | passed |
testSplitReadsByReadGroup[3](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [LB], {.whatever=19}) | 0.110s | passed |
testSplitReadsByReadGroup[4](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) | 0.107s | passed |
testSplitReadsByReadGroup[5](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) | 0.110s | passed |
testSplitReadsByReadGroup[6](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) | 0.113s | passed |
testSplitReadsByReadGroup[7](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [], {=19}) | 0.094s | passed |
testSplitReadsByReadGroup[8](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM], {.Momma=17, .Poppa=2}) | 0.147s | passed |
testSplitReadsByReadGroup[9](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [RG], {.0=17, .1=2}) | 0.142s | passed |
Standard error
[May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:35 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:36 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:36 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:36 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:36 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:36 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:36 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:36 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:37 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:37 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:37 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:37 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:37 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:38 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:38 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:38 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:38 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:38 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:38 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:38 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:39 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:39 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:39 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:39 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:39 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:39 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144 [May 19, 2025 at 7:03:39 PM GMT] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=622854144