Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > ApplyBQSRSparkIntegrationTest
9

tests
0

failures
0

ignored
5.757s

duration
100%

successful

Tests

Test Duration Result
testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) 1.208s passed
testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) 0.717s passed
testApplyBQSR[2](ApplyBQSR(args='null')) 0.785s passed
testApplyBQSR[3](ApplyBQSR(args='-OQ')) 0.636s passed
testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) 0.649s passed
testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) 0.582s passed
testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) 0.462s passed
testPRFailWithLowMaxCycle 0.213s passed
testPRNoFailWithHighMaxCycle 0.505s passed

Standard output

--------------------------------------------------------------------------------
[19:11:03] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[19:11:04] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle

Standard error

[May 19, 2025 at 7:10:59 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:00 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:01 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:02 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:02 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:03 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:03 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:04 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2887778304
[May 19, 2025 at 7:11:04 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2887778304