Class org.broadinstitute.hellbender.tools.spark.RevertSamSparkIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| basicPositiveTests[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, false, false, true, true, null, null, []) | 0.328s | passed |
| basicPositiveTests[10](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.226s | passed |
| basicPositiveTests[11](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, true, false, false, null, null, []) | 0.229s | passed |
| basicPositiveTests[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.174s | passed |
| basicPositiveTests[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.166s | passed |
| basicPositiveTests[3](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, true, false, false, null, null, []) | 0.175s | passed |
| basicPositiveTests[4](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, false, false, true, true, null, null, []) | 0.559s | passed |
| basicPositiveTests[5](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.254s | passed |
| basicPositiveTests[6](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.243s | passed |
| basicPositiveTests[7](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, true, false, false, null, null, []) | 0.254s | passed |
| basicPositiveTests[8](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, false, false, true, true, null, null, []) | 0.479s | passed |
| basicPositiveTests[9](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.241s | passed |
| testFilePathsWithMapFile | 0.002s | passed |
| testIsOutputMapHeaderValid | 0s | passed |
| testNoRgInfoSanitize | 0.207s | passed |
| testOutputByReadGroupWithOutputMap[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) | 0.366s | passed |
| testOutputByReadGroupWithOutputMap[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) | 0.568s | passed |
| testOutputByReadGroupWithOutputMap[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) | 0.493s | passed |
| testSampleLibraryOverride[0](NewSample, null) | 0.114s | passed |
| testSampleLibraryOverride[1](null, NewLibrary) | 0.117s | passed |
| testSampleLibraryOverride[2](NewSample, NewLibrary) | 0.113s | passed |
| testSanitizeAndDeduplicateRecords[0](.sam) | 0.341s | passed |
| testSanitizeAndDeduplicateRecords[1](.bam) | 0.996s | passed |
| testSanitizeAndDeduplicateRecords[2](.cram) | 0.763s | passed |
| testSingleEndSanitize[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) | 0.255s | passed |
| testSingleEndSanitize[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) | 0.910s | passed |
| testSingleEndSanitize[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) | 0.716s | passed |
Standard error
[May 19, 2025 at 7:13:02 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:03 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:03 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:03 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:03 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:04 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:04 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:04 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:05 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:05 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:05 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:05 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:06 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:06 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:07 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:07 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:07 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:07 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:07 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:08 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:09 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:09 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:10 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:11 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640 [May 19, 2025 at 7:13:11 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=933232640