Class org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines.metrics > CollectQualityYieldMetricsSparkIntegrationTest
8

tests
0

failures
0

ignored
1.144s

duration
100%

successful

Tests

Test Duration Result
test[0](valid.bam, valid.CollectQualityYieldMetrics.txt, null, true) 0.197s passed
test[1](valid.cram, valid.CollectQualityYieldMetrics.txt, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectQualityYieldMetrics/valid.fasta, true) 0.161s passed
test[2](collect_quality_yield_metrics.sam, collect_quality_yield_metrics.originalquals.txt, null, true) 0.111s passed
test[3](collect_quality_yield_metrics.sam, collect_quality_yield_metrics.quals.txt, null, false) 0.111s passed
test[4](collect_quality_yield_metrics.dictFix.sam, collect_quality_yield_metrics.originalquals.txt, null, true) 0.110s passed
test[5](collect_quality_yield_metrics.dictFix.sam, collect_quality_yield_metrics.quals.txt, null, false) 0.114s passed
test[6](collect_quality_yield_metrics.dictFix.cram, collect_quality_yield_metrics.originalquals.txt, /gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19_chr1_1M.fasta, true) 0.164s passed
test[7](collect_quality_yield_metrics.dictFix.cram, collect_quality_yield_metrics.quals.txt, /gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19_chr1_1M.fasta, false) 0.176s passed

Standard error

19:14:54.359 INFO  BlockManagerInfo - Removed broadcast_3370_piece0 on localhost:36441 in memory (size: 64.0 KiB, free: 1917.8 MiB)
19:14:54.359 INFO  BlockManagerInfo - Removed broadcast_3386_piece0 on localhost:36441 in memory (size: 143.3 KiB, free: 1917.9 MiB)
19:14:54.360 INFO  BlockManagerInfo - Removed broadcast_3364_piece0 on localhost:36441 in memory (size: 209.3 KiB, free: 1918.1 MiB)
19:14:54.360 INFO  BlockManagerInfo - Removed broadcast_3378_piece0 on localhost:36441 in memory (size: 14.6 KiB, free: 1918.1 MiB)
19:14:54.360 INFO  BlockManagerInfo - Removed broadcast_3381_piece0 on localhost:36441 in memory (size: 207.4 KiB, free: 1918.3 MiB)
19:14:54.360 INFO  BlockManagerInfo - Removed broadcast_3366_piece0 on localhost:36441 in memory (size: 207.9 KiB, free: 1918.5 MiB)
19:14:54.361 INFO  BlockManagerInfo - Removed broadcast_3363_piece0 on localhost:36441 in memory (size: 64.1 KiB, free: 1918.6 MiB)
19:14:54.361 INFO  BlockManagerInfo - Removed broadcast_3375_piece0 on localhost:36441 in memory (size: 64.1 KiB, free: 1918.6 MiB)
19:14:54.361 INFO  BlockManagerInfo - Removed broadcast_3383_piece0 on localhost:36441 in memory (size: 64.0 KiB, free: 1918.7 MiB)
[May 19, 2025 at 7:14:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184
[May 19, 2025 at 7:14:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184
[May 19, 2025 at 7:14:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184
[May 19, 2025 at 7:14:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184
[May 19, 2025 at 7:14:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184
[May 19, 2025 at 7:14:55 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184
[May 19, 2025 at 7:14:55 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184
[May 19, 2025 at 7:14:55 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1713373184