Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest
Tests
| Test |
Duration |
Result |
| testFewSites |
1.333s |
passed |
| testOnRealBam[0](1) |
17.724s |
passed |
| testOnRealBam[1](5) |
18.232s |
passed |
| testTwoSamples |
0.313s |
passed |
Standard error
[May 19, 2025 at 7:21:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:30 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:30 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:31 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:48 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:48 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:48 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:48 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:21:49 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.26 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472