Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.271s |
passed |
| testASEReadCounterImproperPairs |
3.109s |
passed |
| testASEReadCounterMinDepth70 |
0.199s |
passed |
| testASEReadCounterMultipleContexts |
0.139s |
passed |
| testASEReadCounterNonRefAllele |
0.143s |
passed |
| testASEReadCounterWarnings |
0.201s |
passed |
| testASEReadCounterWithCountOverlaps |
0.197s |
passed |
| testASEReadCounterWithCountReads |
0.200s |
passed |
| testASEReadCounterWithHighMQ |
0.201s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.194s |
passed |
| testASEReadCounterWithLowMQ |
0.200s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.200s |
passed |
Standard output
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[19:22:08] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[19:22:08] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[19:22:11] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:22:12] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:22:12] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:22:12] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:22:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:22:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:22:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 19, 2025 at 7:22:08 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:11 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1910505472