Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
14.420s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 7.522s passed
testCompareReadStrands[1](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, CDS, true) 2.061s passed
testConsistentWithPast[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.861s passed
testConsistentWithPast[1](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.861s passed
testConsistentWithPast[2](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 0.940s passed
testConsistentWithPast[3](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.930s passed
testConsistentWithPast[4](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.348s passed
testConsistentWithPast[5](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.353s passed
testConsistentWithPast[6](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.319s passed
testConsistentWithPast[7](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.225s passed

Standard error

[May 19, 2025 at 7:22:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1910505472
[May 19, 2025 at 7:22:18 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2262827008
[May 19, 2025 at 7:22:19 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2262827008
[May 19, 2025 at 7:22:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2694840320
[May 19, 2025 at 7:22:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2927624192
[May 19, 2025 at 7:22:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2927624192
[May 19, 2025 at 7:22:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2927624192
[May 19, 2025 at 7:22:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3089104896
[May 19, 2025 at 7:22:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3089104896
[May 19, 2025 at 7:22:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3089104896
[May 19, 2025 at 7:22:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3089104896
[May 19, 2025 at 7:22:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3089104896
[May 19, 2025 at 7:22:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3089104896
[May 19, 2025 at 7:22:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3089104896
[May 19, 2025 at 7:22:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2541748224
[May 19, 2025 at 7:22:25 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2541748224
[May 19, 2025 at 7:22:26 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2541748224
[May 19, 2025 at 7:22:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2994733056
[May 19, 2025 at 7:22:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2994733056
[May 19, 2025 at 7:22:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2994733056
[May 19, 2025 at 7:22:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2994733056