Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.245s |
passed |
| testSplitsFixNDN |
0.104s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.621s |
passed |
| testSplitsTargetRegionFunctionality |
0.259s |
passed |
| testSplitsWithOverhangs |
0.379s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.366s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.360s |
passed |
| testSplitsWithOverhangsNotClipping |
0.363s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.436s |
passed |
Standard output
--------------------------------------------------------------------------------
[19:22:39] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
--------------------------------------------------------------------------------
[19:22:39] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[19:22:41] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[19:22:41] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
--------------------------------------------------------------------------------
[19:22:41] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
--------------------------------------------------------------------------------
[19:22:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
--------------------------------------------------------------------------------
[19:22:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[19:22:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 19, 2025 at 7:22:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:22:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:22:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:22:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
[May 19, 2025 at 7:22:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=574619648
[May 19, 2025 at 7:22:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=574619648
[May 19, 2025 at 7:22:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=574619648
[May 19, 2025 at 7:22:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=559939584
[May 19, 2025 at 7:22:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=559939584