Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.581s |
passed |
| testApplySNPRecalibration |
1.775s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.103s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.141s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.101s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.089s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.090s |
passed |
Standard output
--------------------------------------------------------------------------------
[19:24:48] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
--------------------------------------------------------------------------------
[19:24:49] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
--------------------------------------------------------------------------------
[19:24:51] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[19:24:51] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[19:24:51] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[19:24:51] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[May 19, 2025 at 7:24:49 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 7:24:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 7:24:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 7:24:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 7:24:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 7:24:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 7:24:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000