Standard error
19:01:56.809 INFO TestEmitUncoveredLociTool - ------------------------------------------------------------
19:01:56.810 INFO TestEmitUncoveredLociTool - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:01:56.810 INFO TestEmitUncoveredLociTool - For support and documentation go to https://software.broadinstitute.org/gatk/
19:01:56.810 INFO TestEmitUncoveredLociTool - Executing as root@41e59f58627b on Linux v6.11.0-1014-azure amd64
19:01:56.810 INFO TestEmitUncoveredLociTool - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:01:56.810 INFO TestEmitUncoveredLociTool - Start Date/Time: May 19, 2025 at 7:01:56 PM GMT
19:01:56.810 INFO TestEmitUncoveredLociTool - ------------------------------------------------------------
19:01:56.810 INFO TestEmitUncoveredLociTool - ------------------------------------------------------------
19:01:56.810 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:01:56.810 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:01:56.810 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:01:56.810 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:01:56.810 INFO TestEmitUncoveredLociTool - Deflater: IntelDeflater
19:01:56.810 INFO TestEmitUncoveredLociTool - Inflater: IntelInflater
19:01:56.810 INFO TestEmitUncoveredLociTool - GCS max retries/reopens: 20
19:01:56.810 INFO TestEmitUncoveredLociTool - Requester pays: disabled
19:01:56.810 INFO TestEmitUncoveredLociTool - Initializing engine
19:01:56.815 INFO IntervalArgumentCollection - Processing 10 bp from intervals
19:01:56.816 INFO TestEmitUncoveredLociTool - Done initializing engine
19:01:56.816 INFO ProgressMeter - Starting traversal
19:01:56.816 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute
19:01:56.818 INFO TestEmitUncoveredLociTool - 0 read(s) filtered by: WellformedReadFilter
0 read(s) filtered by: MappedReadFilter
0 total reads filtered out of 5 reads processed
19:01:56.819 INFO ProgressMeter - unmapped 0.0 10 300000.0
19:01:56.819 INFO ProgressMeter - Traversal complete. Processed 10 total loci in 0.0 minutes.
19:01:56.819 INFO TestEmitUncoveredLociTool - Shutting down engine
[May 19, 2025 at 7:01:56 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestEmitUncoveredLociTool done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1115684864
19:01:56.836 INFO TestTransformedLocusWalker - ------------------------------------------------------------
19:01:56.836 INFO TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-5-g0192957-SNAPSHOT
19:01:56.836 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:01:56.836 INFO TestTransformedLocusWalker - Executing as root@41e59f58627b on Linux v6.11.0-1014-azure amd64
19:01:56.836 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
19:01:56.836 INFO TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 7:01:56 PM GMT
19:01:56.836 INFO TestTransformedLocusWalker - ------------------------------------------------------------
19:01:56.836 INFO TestTransformedLocusWalker - ------------------------------------------------------------
19:01:56.836 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:01:56.836 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:01:56.836 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:01:56.836 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:01:56.836 INFO TestTransformedLocusWalker - Deflater: IntelDeflater
19:01:56.836 INFO TestTransformedLocusWalker - Inflater: IntelInflater
19:01:56.836 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20
19:01:56.836 INFO TestTransformedLocusWalker - Requester pays: disabled
19:01:56.836 INFO TestTransformedLocusWalker - Initializing engine
19:01:56.840 INFO IntervalArgumentCollection - Processing 1 bp from intervals
19:01:56.840 INFO TestTransformedLocusWalker - Done initializing engine
19:01:56.840 INFO ProgressMeter - Starting traversal
19:01:56.840 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute
19:01:56.842 INFO TestTransformedLocusWalker - 0 read(s) filtered by:
19:01:56.842 INFO ProgressMeter - unmapped 0.0 1 30000.0
19:01:56.842 INFO ProgressMeter - Traversal complete. Processed 1 total loci in 0.0 minutes.
19:01:56.842 INFO TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 7:01:56 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1115684864