| Test |
Duration |
Result |
| collapseAlgorithmsTest[0]([[depth]], [depth]) |
0.001s |
passed |
| collapseAlgorithmsTest[10]([[depth, pesr], [depth, pesr]], [depth, pesr]) |
0.001s |
passed |
| collapseAlgorithmsTest[1]([[depth], [depth]], [depth]) |
0s |
passed |
| collapseAlgorithmsTest[2]([[pesr]], [pesr]) |
0s |
passed |
| collapseAlgorithmsTest[3]([[pesrA, pesrB]], [pesrA, pesrB]) |
0s |
passed |
| collapseAlgorithmsTest[4]([[pesrB, pesrA]], [pesrA, pesrB]) |
0s |
passed |
| collapseAlgorithmsTest[5]([[pesrA], [pesrB]], [pesrA, pesrB]) |
0s |
passed |
| collapseAlgorithmsTest[6]([[pesrB], [pesrA]], [pesrA, pesrB]) |
0s |
passed |
| collapseAlgorithmsTest[7]([[pesrA, pesrB], [pesrB]], [pesrA, pesrB]) |
0s |
passed |
| collapseAlgorithmsTest[8]([[pesrB, pesrA], [pesrA]], [pesrA, pesrB]) |
0s |
passed |
| collapseAlgorithmsTest[9]([[pesr], [depth]], [depth, pesr]) |
0s |
passed |
| collapseAltAllelesTest[0]([[]], DEL, [Ljava.lang.Integer;@7479b19a, [Ljava.lang.Integer;@4be8c1bb, [], []) |
0.001s |
passed |
| collapseAltAllelesTest[10]([[<INS>], [<INS:MEI>]], INS, [Ljava.lang.Integer;@2c95cb24, [Ljava.lang.Integer;@75f3c0c9, [<INS>], [<INS:MEI>]) |
0.001s |
passed |
| collapseAltAllelesTest[11]([[<INS:MEI>], [<INS:MEI:SVA>]], INS, [Ljava.lang.Integer;@70b2819f, [Ljava.lang.Integer;@65dac812, [<INS:MEI>], [<INS:MEI:SVA>]) |
0.001s |
passed |
| collapseAltAllelesTest[12]([[<INS:MEI:LINE>], [<INS:MEI:SVA>]], INS, [Ljava.lang.Integer;@7de4bd8f, [Ljava.lang.Integer;@193e65d5, [<INS:MEI>], [<INS:MEI>]) |
0s |
passed |
| collapseAltAllelesTest[1]([[N*]], DEL, [Ljava.lang.Integer;@53eb4dae, [Ljava.lang.Integer;@23df16cf, [], []) |
0s |
passed |
| collapseAltAllelesTest[2]([[A*]], DEL, [Ljava.lang.Integer;@7e8e111d, [Ljava.lang.Integer;@7781b55f, [], []) |
0.001s |
passed |
| collapseAltAllelesTest[3]([[.]], DEL, [Ljava.lang.Integer;@511f21f9, [Ljava.lang.Integer;@5f97d43e, [], []) |
0s |
passed |
| collapseAltAllelesTest[4]([[A]], INS, [Ljava.lang.Integer;@142422a4, [Ljava.lang.Integer;@3c9cd930, [A], [A]) |
0s |
passed |
| collapseAltAllelesTest[5]([[<DEL>]], DEL, [Ljava.lang.Integer;@4dd31687, [Ljava.lang.Integer;@78d72c9b, [<DEL>], [<DEL>]) |
0.001s |
passed |
| collapseAltAllelesTest[6]([[N*], [<DEL>]], DEL, [Ljava.lang.Integer;@2175111e, [Ljava.lang.Integer;@74c74c99, [<DEL>], [<DEL>]) |
0s |
passed |
| collapseAltAllelesTest[7]([[N*, N*], [N*, <DEL>]], DEL, [Ljava.lang.Integer;@56f1db5f, [Ljava.lang.Integer;@5f05cd7e, [<DEL>], [<DEL>]) |
0s |
passed |
| collapseAltAllelesTest[8]([[N*, <DUP>], [N*, <DEL>]], CNV, [Ljava.lang.Integer;@c6b08a5, [Ljava.lang.Integer;@54980154, [<DEL>, <DUP>], [<DEL>, <DUP>]) |
0.001s |
passed |
| collapseAltAllelesTest[9]([[<INS:MEI>], [<INS:MEI>]], INS, [Ljava.lang.Integer;@7335414e, [Ljava.lang.Integer;@274f51ad, [<INS:MEI>], [<INS:MEI>]) |
0s |
passed |
| collapseAttributesTest[0]([Ljava.lang.String;@250fc0d1, [Ljava.lang.Object;@7ddf193a, [Ljava.lang.String;@17a5cb99, [Ljava.lang.Object;@808fa1, [Ljava.lang.String;@5b52ce28, [Ljava.lang.Object;@5ec10ab1, OR) |
0s |
passed |
| collapseAttributesTest[10]([Ljava.lang.String;@546f0f36, [Ljava.lang.Object;@44d5a0a8, [Ljava.lang.String;@35d128fd, [Ljava.lang.Object;@39a809db, [Ljava.lang.String;@1512a767, [Ljava.lang.Object;@7c2b858d, OR) |
0s |
passed |
| collapseAttributesTest[11]([Ljava.lang.String;@399ef33f, [Ljava.lang.Object;@39b752f4, [Ljava.lang.String;@1990afa2, [Ljava.lang.Object;@57be28d1, [Ljava.lang.String;@19f72e12, [Ljava.lang.Object;@1ad4ff2a, OR) |
0s |
passed |
| collapseAttributesTest[12]([Ljava.lang.String;@207bf6d8, [Ljava.lang.Object;@5cdb7b, [Ljava.lang.String;@3dcc59f5, [Ljava.lang.Object;@16b1dee7, [Ljava.lang.String;@690337df, [Ljava.lang.Object;@f62ae87, AND) |
0.001s |
passed |
| collapseAttributesTest[13]([Ljava.lang.String;@38ad8c75, [Ljava.lang.Object;@22a10b71, [Ljava.lang.String;@d67f6f, [Ljava.lang.Object;@4fc28b23, [Ljava.lang.String;@1b58788a, [Ljava.lang.Object;@31881213, AND) |
0s |
passed |
| collapseAttributesTest[14]([Ljava.lang.String;@595626b8, [Ljava.lang.Object;@1928930, [Ljava.lang.String;@707b0b9b, [Ljava.lang.Object;@43ac1fa0, [Ljava.lang.String;@2ba7828b, [Ljava.lang.Object;@3e6945c6, AND) |
0s |
passed |
| collapseAttributesTest[15]([Ljava.lang.String;@3514ea20, [Ljava.lang.Object;@223095d3, [Ljava.lang.String;@5683a326, [Ljava.lang.Object;@7574d30b, [Ljava.lang.String;@6723626f, [Ljava.lang.Object;@411bed55, AND) |
0.001s |
passed |
| collapseAttributesTest[16]([Ljava.lang.String;@3bd69bf6, [Ljava.lang.Object;@662754bb, [Ljava.lang.String;@1377b7bf, [Ljava.lang.Object;@7bfc7533, [Ljava.lang.String;@74fa4891, [Ljava.lang.Object;@28245839, AND) |
0s |
passed |
| collapseAttributesTest[17]([Ljava.lang.String;@1e0d70db, [Ljava.lang.Object;@38950d4b, [Ljava.lang.String;@32fa7ff0, [Ljava.lang.Object;@32fccfc2, [Ljava.lang.String;@4702faee, [Ljava.lang.Object;@576d4810, AND) |
0s |
passed |
| collapseAttributesTest[18]([Ljava.lang.String;@62dfe32e, [Ljava.lang.Object;@32dab011, [Ljava.lang.String;@fca4392, [Ljava.lang.Object;@747fb4b1, [Ljava.lang.String;@6924ff83, [Ljava.lang.Object;@e19908e, AND) |
0s |
passed |
| collapseAttributesTest[19]([Ljava.lang.String;@5ac168e3, [Ljava.lang.Object;@14574cdf, [Ljava.lang.String;@5608233b, [Ljava.lang.Object;@11fd6f02, [Ljava.lang.String;@40aa9bae, [Ljava.lang.Object;@6eb506d0, ALWAYS_FALSE) |
0s |
passed |
| collapseAttributesTest[1]([Ljava.lang.String;@63f88d35, [Ljava.lang.Object;@2e962cec, [Ljava.lang.String;@78543f0d, [Ljava.lang.Object;@10e28d97, [Ljava.lang.String;@37d43b9b, [Ljava.lang.Object;@28ba90c1, OR) |
0.001s |
passed |
| collapseAttributesTest[2]([Ljava.lang.String;@7545cb17, [Ljava.lang.Object;@635b3ec7, [Ljava.lang.String;@1f9b86f5, [Ljava.lang.Object;@15aa3084, [Ljava.lang.String;@4e6c4c55, [Ljava.lang.Object;@74fbee59, OR) |
0s |
passed |
| collapseAttributesTest[3]([Ljava.lang.String;@737e4a7b, [Ljava.lang.Object;@5f5caea5, [Ljava.lang.String;@747e0a31, [Ljava.lang.Object;@60ee1a29, [Ljava.lang.String;@6142b9dd, [Ljava.lang.Object;@5bd11ad6, OR) |
0s |
passed |
| collapseAttributesTest[4]([Ljava.lang.String;@4f55da9b, [Ljava.lang.Object;@3bad0efd, [Ljava.lang.String;@68f9a4f4, [Ljava.lang.Object;@626967a0, [Ljava.lang.String;@309e874, [Ljava.lang.Object;@5080c40e, OR) |
0.001s |
passed |
| collapseAttributesTest[5]([Ljava.lang.String;@5c863996, [Ljava.lang.Object;@1000303a, [Ljava.lang.String;@46763680, [Ljava.lang.Object;@6b0796d4, [Ljava.lang.String;@62048ab, [Ljava.lang.Object;@173039b5, OR) |
0s |
passed |
| collapseAttributesTest[6]([Ljava.lang.String;@37635407, [Ljava.lang.Object;@33822750, [Ljava.lang.String;@25e95d04, [Ljava.lang.Object;@6b5dc4bb, [Ljava.lang.String;@46b376bb, [Ljava.lang.Object;@64a9719a, OR) |
0s |
passed |
| collapseAttributesTest[7]([Ljava.lang.String;@eba64a9, [Ljava.lang.Object;@53e1cd6b, [Ljava.lang.String;@7ceb432c, [Ljava.lang.Object;@4f143176, [Ljava.lang.String;@12568b11, [Ljava.lang.Object;@4f8186a5, OR) |
0s |
passed |
| collapseAttributesTest[8]([Ljava.lang.String;@7244d87, [Ljava.lang.Object;@210c4071, [Ljava.lang.String;@627b5e5b, [Ljava.lang.Object;@211ffbd0, [Ljava.lang.String;@472d201, [Ljava.lang.Object;@473e0536, OR) |
0s |
passed |
| collapseAttributesTest[9]([Ljava.lang.String;@2110b756, [Ljava.lang.Object;@33e09baf, [Ljava.lang.String;@4c02f50, [Ljava.lang.Object;@35852b6, [Ljava.lang.String;@27d6ff8c, [Ljava.lang.Object;@105c253a, OR) |
0s |
passed |
| collapseIntervalRepresentativeByCoordinatesTest |
0.001s |
passed |
| collapseIntervalRepresentativeTest[0](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@3f3b0b19, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@3aac9173, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[10](-99.0, -99.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@32950acc, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@47a22020, true) |
0s |
passed |
| collapseIntervalRepresentativeTest[11](null, 0.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@2fb36d8d, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@35eac1dd, true) |
0.001s |
passed |
| collapseIntervalRepresentativeTest[12](0.0, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@2e3fa7a7, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@1a5478e8, true) |
0s |
passed |
| collapseIntervalRepresentativeTest[13](null, 0.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@60f6c148, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@3327406e, true) |
0s |
passed |
| collapseIntervalRepresentativeTest[14](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@6e089bcb, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@38a2fbc3, true) |
0.001s |
passed |
| collapseIntervalRepresentativeTest[15](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@5409305f, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@7e753fd6, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[16](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@55691a59, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@3152a0a3, true) |
0.001s |
passed |
| collapseIntervalRepresentativeTest[17](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@1e686da2, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@3ce17e4, true) |
0s |
passed |
| collapseIntervalRepresentativeTest[18](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@3b3639f9, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@66ee4640, true) |
0s |
passed |
| collapseIntervalRepresentativeTest[19](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@5ddd3fbd, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@57ae3c0e, false) |
0.001s |
passed |
| collapseIntervalRepresentativeTest[1](0.0, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@18cb7c6, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@6608072d, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[20](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@361d56a3, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@289a70a, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[2](null, 0.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@7ce09850, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@1836228d, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[3](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@fcd300e, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@77971bbf, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[4](-99.0, -99.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@7f15639c, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@24cdc97f, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[5](null, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@466d87a1, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@12300573, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[6](-99.0, null, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@3d5e1b83, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@2fd79ac6, true) |
0.001s |
passed |
| collapseIntervalRepresentativeTest[7](null, -99.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@233202aa, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@6e7d874c, false) |
0s |
passed |
| collapseIntervalRepresentativeTest[8](-10.0, -9.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@43051a8d, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@70916715, true) |
0s |
passed |
| collapseIntervalRepresentativeTest[9](-10.0, -9.0, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@76b06e50, [Lorg.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFConstants$EvidenceTypes;@1d0ac379, true) |
0s |
passed |
| collapseIntervalTest[0]([Ljava.lang.String;@5216e43c, [I@e620893, [I@411c5fa2, DEL, [I@68fce3e5, [I@d2eddc2, [I@13967a64, [I@30d4d6fb) |
0.008s |
passed |
| collapseIntervalTest[1]([Ljava.lang.String;@22112da1, [I@6f0969db, [I@38eb2140, DEL, [I@4f06006d, [I@64514009, [I@40b2aae9, [I@2132629e) |
0.001s |
passed |
| collapseIntervalTest[2]([Ljava.lang.String;@54a81a18, [I@591e27f1, [I@6803b02d, DEL, [I@5862a07b, [I@4c0e09b5, [I@64078e6a, [I@1170d81f) |
0.001s |
passed |
| collapseIntervalTest[3]([Ljava.lang.String;@60232aad, [I@380f9c1d, [I@2fa81b23, DUP, [I@155788a7, [I@6cd8aee2, [I@28f33810, [I@476d5f2e) |
0s |
passed |
| collapseIntervalTest[4]([Ljava.lang.String;@4750e942, [I@76527a00, [I@5bebdfcb, DUP, [I@2ca6937, [I@42908ad5, [I@27777afd, [I@22e7ec5f) |
0.001s |
passed |
| collapseIntervalTest[5]([Ljava.lang.String;@35355074, [I@290964bd, [I@3411e0d7, BND, [I@6a2d0632, [I@75044df3, [I@17caf362, [I@2c66be14) |
0s |
passed |
| collapseIntervalTest[6]([Ljava.lang.String;@79c48ad5, [I@39d5376c, [I@20dab85c, BND, [I@4fc41cba, [I@120bb5b5, [I@2f59ecf, [I@7798de95) |
0s |
passed |
| collapseIntervalTest[7]([Ljava.lang.String;@573f95b2, [I@79927a7c, [I@484f7fad, INS, [I@61d87509, [I@4ae1ee85, [I@20ca2c3f, [I@134b9d9c) |
0.001s |
passed |
| collapseIntervalTest[8]([Ljava.lang.String;@74c997b1, [I@593f6c3, [I@4afb2c90, INS, [I@358b70c4, [I@d471ddb, [I@17f8c75e, [I@474f69d) |
0s |
passed |
| collapseInvalidAltAllelesTest |
0s |
passed |
| collapseLengthTest[0](org.broadinstitute.hellbender.tools.sv.SVCallRecord@e182453, INS, 100) |
0s |
passed |
| collapseLengthTest[1](org.broadinstitute.hellbender.tools.sv.SVCallRecord@7ae736a8, INS, null) |
0s |
passed |
| collapseLengthTest[2](org.broadinstitute.hellbender.tools.sv.SVCallRecord@34ceefb5, BND, null) |
0s |
passed |
| collapseLengthTest[3](org.broadinstitute.hellbender.tools.sv.SVCallRecord@50e0541, CTX, null) |
0s |
passed |
| collapseLengthTest[4](org.broadinstitute.hellbender.tools.sv.SVCallRecord@6654e105, CPX, 50) |
0s |
passed |
| collapseLengthTest[5](org.broadinstitute.hellbender.tools.sv.SVCallRecord@2cef4321, DEL, 100) |
0s |
passed |
| collapseLengthTest[6](org.broadinstitute.hellbender.tools.sv.SVCallRecord@6859f102, DUP, 200) |
0s |
passed |
| collapseLengthTest[7](org.broadinstitute.hellbender.tools.sv.SVCallRecord@1467dcd0, CNV, 300) |
0s |
passed |
| collapseSampleGenotypesTest[0](sample, [[]], [{ECN=0}], N*, [sample NA {ECN=0}]) |
0s |
passed |
| collapseSampleGenotypesTest[10](sample, [[N*, N*], [N*, <INS>]], [{ECN=2}, {ECN=2}], N*, [sample N*/<INS> {ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[11](sample, [[N*, N*], [N*, <INS>]], [{ECN=2, GQ=30}, {ECN=2, GQ=20}], N*, [sample N*/<INS> {ECN=2, GQ=20}]) |
0s |
passed |
| collapseSampleGenotypesTest[12](sample, [[<INS>, <INS>], [N*, <INS>]], [{ECN=2}, {ECN=2}], N*, [sample N*/<INS> {ECN=2}]) |
0.001s |
passed |
| collapseSampleGenotypesTest[13](sample, [[<INS>, <INS>], [N*, <INS>]], [{ECN=2, GQ=30}, {ECN=2, GQ=30}], N*, [sample N*/<INS> {ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[14](sample, [[<INS>, <INS>], [N*, <INS>]], [{ECN=2, GQ=40}, {ECN=2, GQ=30}], N*, [sample <INS>/<INS> {ECN=2, GQ=40}]) |
0s |
passed |
| collapseSampleGenotypesTest[15](sample, [[<INS>, <INS>], [N*, <INS>], [N*, N*]], [{ECN=2, GQ=30}, {ECN=2, GQ=30}, {ECN=2, GQ=30}], N*, [sample N*/<INS> {ECN=2, GQ=30}]) |
0s |
passed |
| collapseSampleGenotypesTest[16](sample, [[<INS>, <INS>], [N*, <INS>], [N*, N*], [., .]], [{ECN=2, GQ=30}, {ECN=2, GQ=40}, {ECN=2, GQ=50}, {ECN=2, GQ=50}], N*, [sample N*/<INS> {ECN=2, GQ=40}]) |
0s |
passed |
| collapseSampleGenotypesTest[17](sample, [[N*, N*, <INS>], [N*, N*, N*]], [{ECN=3}, {ECN=3}], N*, [sample N*/N*/<INS> {ECN=3}]) |
0s |
passed |
| collapseSampleGenotypesTest[18](sample, [[N*, <INS>, <INS>], [N*, N*, <INS>], [N*, N*, N*]], [{ECN=3}, {ECN=3}, {ECN=3}], N*, [sample N*/N*/<INS> {ECN=3}]) |
0s |
passed |
| collapseSampleGenotypesTest[19](sample, [[N*, N*, <INS>], [N*, N*, N*], [N*, <INS>, <INS>], [N*, <INS>, <INS>]], [{ECN=3}, {ECN=3}, {ECN=3}, {ECN=3}], N*, [sample N*/N*/<INS> {ECN=3}]) |
0s |
passed |
| collapseSampleGenotypesTest[1](sample, [[]], [{ECN=0, TEST_KEY_1=test}], N*, [sample NA {ECN=0, TEST_KEY_1=test}]) |
0s |
passed |
| collapseSampleGenotypesTest[20](sample, [[<INS>, <INS>, <INS>], [<INS>, <INS>, <INS>], [<INS>, <INS>, <INS>], [N*, <INS>, <INS>], [N*, <INS>, <INS>], [N*, N*, <INS>], [N*, N*, N*]], [{ECN=3}, {ECN=3}, {ECN=3}, {ECN=3}, {ECN=3}, {ECN=3}, {ECN=3}], N*, [sample N*/N*/<INS> {ECN=3}]) |
0s |
passed |
| collapseSampleGenotypesTest[21](sample, [[N*], [<DEL>]], [{ECN=1, CN=1}, {ECN=1, CN=0}], N*, [sample <DEL> {CN=0, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[22](sample, [[N*], [.]], [{ECN=1, CN=1}, {ECN=1, CN=0}], N*, [sample N* {CN=1, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[23](sample, [[N*, N*], [N*, <DEL>]], [{ECN=2, CN=2}, {ECN=2, CN=1}], N*, [sample N*/<DEL> {CN=1, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[24](sample, [[N*, N*], [<DEL>, <DEL>]], [{ECN=2, CN=2}, {ECN=2, CN=0}], N*, [sample <DEL>/<DEL> {CN=0, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[25](sample, [[N*], [<DUP>]], [{ECN=1, CN=1}, {ECN=1, CN=2}], N*, [sample <DUP> {CN=2, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[26](sample, [[<DUP>], [<DUP>]], [{ECN=1, CNQ=20, CN=2}, {ECN=1, CNQ=30, CN=2}], N*, [sample <DUP> {CN=2, CNQ=30, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[27](sample, [[N*, N*], [N*, <DUP>]], [{ECN=2, CN=2}, {ECN=2, CN=3}], N*, [sample N*/<DUP> {CN=3, ECN=2}]) |
0.001s |
passed |
| collapseSampleGenotypesTest[28](sample, [[N*, N*], [<DUP>, <DUP>]], [{ECN=2, CN=2}, {ECN=2, CN=4}], N*, [sample <DUP>/<DUP> {CN=4, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[29](sample, [[N*, N*], [N*, N*]], [{ECN=2, CN=2}, {ECN=2, CN=2}], N*, [sample N*/N* {CN=2, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[2](sample, [[.], [.]], [{ECN=1}, {ECN=1}], N*, [sample . {ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[30](sample, [[N*, N*, N*], [N*, N*, <DUP>]], [{ECN=3, CN=3}, {ECN=3, CN=4}], N*, [sample N*/N*/<DUP> {CN=4, ECN=3}]) |
0s |
passed |
| collapseSampleGenotypesTest[31](sample, [[N*, N*, N*], [N*, <DUP>, <DUP>]], [{ECN=3, CN=3}, {ECN=3, CN=5}], N*, [sample N*/<DUP>/<DUP> {CN=5, ECN=3}]) |
0s |
passed |
| collapseSampleGenotypesTest[32](sample, [[N*, N*, N*], [N*, N*, <DUP>], [., ., .]], [{ECN=3, CN=3}, {ECN=3, CN=4}, {ECN=3, CN=5}], N*, [sample N*/N*/<DUP> {CN=4, ECN=3}]) |
0s |
passed |
| collapseSampleGenotypesTest[33](sample, [[.], [.]], [{ECN=1, CN=1}, {ECN=1, CN=1}], N*, [sample . {CN=1, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[34](sample, [[.], [.]], [{ECN=1, CN=1}, {ECN=1, CN=2}], N*, [sample . {CN=1, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[35](sample, [[., .], [., .]], [{ECN=1, CNQ=30, CN=1}, {ECN=1, CNQ=30, CN=2}], N*, [sample ./. {CN=1, CNQ=30, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[36](sample, [[., .], [., .]], [{ECN=2, CNQ=30, CN=2}, {ECN=2, CNQ=30, CN=3}], N*, [sample ./. {CN=2, CNQ=30, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[37](sample, [[., .], [., .]], [{ECN=2, CNQ=30, CN=2}, {ECN=2, CNQ=30, CN=1}], N*, [sample ./. {CN=2, CNQ=30, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[38](sample, [[., .], [., .]], [{ECN=2, CNQ=30, CN=2}, {ECN=2, CNQ=30, CN=0}], N*, [sample ./. {CN=2, CNQ=30, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[39](sample, [[., .], [., .]], [{ECN=2, CNQ=30, CN=1}, {ECN=2, CNQ=30, CN=0}], N*, [sample ./. {CN=1, CNQ=30, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[3](sample, [[T*], [T*]], [{ECN=1}, {ECN=1}], T*, [sample T* {ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[40](sample, [[., .], [., .]], [{ECN=2, CNQ=30, CN=5}, {ECN=2, CNQ=30, CN=6}], N*, [sample ./. {CN=5, CNQ=30, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[41](sample, [[.], [.]], [{ECN=1, CNQ=30, CN=2}, {ECN=1, CNQ=40, CN=0}], N*, [sample . {CN=0, CNQ=40, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[42](sample, [[.], [.]], [{ECN=1, CNQ=50, CN=2}, {ECN=1, CNQ=40, CN=0}], N*, [sample . {CN=2, CNQ=50, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[43](sample, [[.], [.]], [{ECN=1, CNQ=30, CN=2}, {ECN=1, CNQ=30, CN=0}], N*, [sample . {CN=0, CNQ=30, ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[44](sample, [[.], [.]], [{ECN=2, CNQ=30, CN=0}, {ECN=2, CNQ=30, CN=4}], N*, [sample . {CN=0, CNQ=30, ECN=2}]) |
0.001s |
passed |
| collapseSampleGenotypesTest[45](sample, [[.], [.]], [{ECN=2, CNQ=30, CN=1}, {ECN=2, CNQ=30, CN=3}], N*, [sample . {CN=1, CNQ=30, ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[4](sample, [[T*], [.]], [{ECN=1}, {ECN=1}], T*, [sample T* {ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[5](sample, [[N*, N*], [N*, N*]], [{ECN=2}, {ECN=2}], N*, [sample N*/N* {ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[6](sample, [[N*, N*], [., .]], [{ECN=2}, {ECN=2}], N*, [sample N*/N* {ECN=2}]) |
0s |
passed |
| collapseSampleGenotypesTest[7](sample, [[N*], [<INS>]], [{ECN=1}, {ECN=1}], N*, [sample <INS> {ECN=1}]) |
0s |
passed |
| collapseSampleGenotypesTest[8](sample, [[.], [<INS>]], [{ECN=1, GQ=30}, {ECN=1, GQ=20}], N*, [sample <INS> {ECN=1, GQ=20}]) |
0s |
passed |
| collapseSampleGenotypesTest[9](sample, [[<INS>], [<INS>]], [{ECN=1, GQ=20}, {ECN=1, GQ=30}], N*, [sample <INS> {ECN=1, GQ=30}]) |
0.001s |
passed |
| collapseTypesTest[0]([DEL], DEL) |
0s |
passed |
| collapseTypesTest[10]([INV, INV], INV) |
0s |
passed |
| collapseTypesTest[11]([BND, BND], BND) |
0s |
passed |
| collapseTypesTest[12]([CNV, CNV], CNV) |
0s |
passed |
| collapseTypesTest[13]([DEL, DUP, CNV], CNV) |
0s |
passed |
| collapseTypesTest[1]([DUP], DUP) |
0s |
passed |
| collapseTypesTest[2]([INS], INS) |
0s |
passed |
| collapseTypesTest[3]([INV], INV) |
0s |
passed |
| collapseTypesTest[4]([BND], BND) |
0s |
passed |
| collapseTypesTest[5]([CNV], CNV) |
0s |
passed |
| collapseTypesTest[6]([DEL, DUP], CNV) |
0s |
passed |
| collapseTypesTest[7]([DEL, DEL], DEL) |
0s |
passed |
| collapseTypesTest[8]([DUP, DUP], DUP) |
0s |
passed |
| collapseTypesTest[9]([INS, INS], INS) |
0s |
passed |
| getMostPreciseCallsTest[0]([Ljava.lang.String;@3e4d197, [[depth]], [depth1]) |
0.001s |
passed |
| getMostPreciseCallsTest[1]([Ljava.lang.String;@2910c3ae, [[depth], [depth]], [depth1, depth2]) |
0s |
passed |
| getMostPreciseCallsTest[2]([Ljava.lang.String;@543895d2, [[pesr]], [pesr1]) |
0.001s |
passed |
| getMostPreciseCallsTest[3]([Ljava.lang.String;@2fd16368, [[pesr], [pesr]], [pesr1, pesr2]) |
0s |
passed |
| getMostPreciseCallsTest[4]([Ljava.lang.String;@470a2845, [[depth], [pesr]], [pesr1]) |
0s |
passed |
| getMostPreciseCallsTest[5]([Ljava.lang.String;@21e72fb2, [[depth, pesr], [depth]], [mixed1]) |
0s |
passed |
| getMostPreciseCallsTest[6]([Ljava.lang.String;@3744c760, [[depth, pesr], [pesr]], [pesr1, mixed1]) |
0.001s |
passed |
| makeBiallelicListTest[0](<DEL>, A*, 0, 0, []) |
0s |
passed |
| makeBiallelicListTest[1](<DEL>, A*, 0, 1, [A*]) |
0.001s |
passed |
| makeBiallelicListTest[2](<DEL>, A*, 1, 1, [<DEL>]) |
0s |
passed |
| makeBiallelicListTest[3](<INS>, A*, 1, 1, [<INS>]) |
0s |
passed |
| makeBiallelicListTest[4](<DEL>, A*, 1, 2, [A*, <DEL>]) |
0s |
passed |
| makeBiallelicListTest[5](<DEL>, A*, 2, 2, [<DEL>, <DEL>]) |
0s |
passed |
| makeBiallelicListTest[6](<DEL>, A*, 2, 2, [<DEL>, <DEL>]) |
0s |
passed |
| makeBiallelicListTest[7](<DEL>, A*, 2, 3, [A*, <DEL>, <DEL>]) |
0s |
passed |
| testCollapseRefAlleles[0](1, N*) |
0s |
passed |
| testCollapseRefAlleles[1](100000, C*) |
0s |
passed |
| testCollapseRefAlleles[2](100001, A*) |
0s |
passed |
| testCollapseRefAlleles[3](100002, C*) |
0s |
passed |
| testCollapseRefAlleles[4](100003, T*) |
0.001s |
passed |
| testCollapseRefAlleles[5](248956422, N*) |
0s |
passed |
| testCollapse[0](org.broadinstitute.hellbender.tools.sv.cluster.SVClusterEngine$OutputCluster@ab40f46, org.broadinstitute.hellbender.tools.sv.SVCallRecord@13ac7281) |
0s |
passed |
| testCollapse[1](org.broadinstitute.hellbender.tools.sv.cluster.SVClusterEngine$OutputCluster@409a164d, org.broadinstitute.hellbender.tools.sv.SVCallRecord@6a7eef27) |
0.001s |
passed |
| testCollapse[2](org.broadinstitute.hellbender.tools.sv.cluster.SVClusterEngine$OutputCluster@6d95b51d, org.broadinstitute.hellbender.tools.sv.SVCallRecord@7d2dfe9c) |
0.003s |
passed |
| testComplexSubtypeAndIntervals |
0.007s |
passed |
| testConstructBndAllele[0](true, true, contigB, 10, A, A]contigB:10]) |
0s |
passed |
| testConstructBndAllele[1](true, false, contigB, 10, T, T[contigB:10[) |
0s |
passed |
| testConstructBndAllele[2](false, true, contigB, 20, C, ]contigB:20]C) |
0.003s |
passed |
| testConstructBndAllele[3](false, false, contigB, 20, G, [contigB:20[G) |
0s |
passed |
| testGetDistance[0](5, 10, [I@3dfef314, [I@7edab945, 15) |
0s |
passed |
| testGetDistance[1](5, 10, [I@6bbd645, [I@4c97e3d5, 5) |
0s |
passed |
| testGetDistance[2](5, 10, [I@5d6e77a4, [I@5bf9bb2, 10) |
0s |
passed |
| testGetDistance[3](5, 10, [I@7231c423, [I@5c4c4e96, 0) |
0s |
passed |
| testGetDistance[4](5, 10, [I@7902b006, [I@5ee63d9, 11) |
0s |
passed |
| testGetDistance[5](0, 0, [I@27c68ccb, [I@4ba88ab5, 0) |
0s |
passed |
| testGetDistance[6](-5, -10, [I@43905ade, [I@502326b3, 11) |
0.001s |
passed |
| testHarmonizeAltAlleles[0]([<DEL>], [[null A*/<DEL>]], null) |
0s |
passed |
| testHarmonizeAltAlleles[1]([<DEL>], [[null A*/A*]], null) |
0s |
passed |
| testHarmonizeAltAlleles[2]([], [[null A*/A*]], null) |
0s |
passed |
| testHarmonizeAltAlleles[3]([<DEL>, <DUP>], [[null A*/<DEL>]], null) |
0s |
passed |
| testHarmonizeAltAlleles[4]([<DEL>, <DUP>], [[null A*/A*]], null) |
0.001s |
passed |
| testHarmonizeAltAlleles[5]([<DEL>, <DUP>], [[null A*/<DEL>], [null A*/<DUP>]], null) |
0s |
passed |
| testHarmonizeAltAlleles[6]([<DUP>], [[null A*/<DUP:TANDEM>]], [[null A*/<DUP>]]) |
0s |
passed |
| testHarmonizeAltAlleles[7]([<DUP:TANDEM>], [[null A*/<DUP>]], [[null A*/<DUP:TANDEM>]]) |
0s |
passed |
| testHarmonizeAltAlleles[8]([<DUP:TANDEM>], [[null A*/<DUP>], [null A*/<DUP:TANDEM>]], [[null A*/<DUP:TANDEM>], [null A*/<DUP:TANDEM>]]) |
0s |
passed |
| testHarmonizeAltAlleles[9]([<INS:MEI>], [[null A*/<INS>], [null A*/<INS:MEI>]], [[null A*/<INS:MEI>], [null A*/<INS:MEI>]]) |
0s |
passed |