Class org.broadinstitute.hellbender.tools.walkers.annotator.VariantOverlapAnnotatorUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > VariantOverlapAnnotatorUnitTest
193

tests
0

failures
0

ignored
0.589s

duration
100%

successful

Tests

Test Duration Result
testAnnotateOverlapsEmpty[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlapsEmpty[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlapsEmpty[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0s passed
testAnnotateOverlapsEmpty[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.001s passed
testAnnotateOverlapsEmpty[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateOverlapsEmpty[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0s passed
testAnnotateOverlapsEmpty[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateOverlapsEmpty[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateOverlapsEmpty[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testAnnotateOverlapsFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.010s passed
testAnnotateOverlapsFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.006s passed
testAnnotateOverlapsFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testAnnotateOverlapsFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testAnnotateOverlapsFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.006s passed
testAnnotateOverlapsFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.006s passed
testAnnotateOverlapsFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.006s passed
testAnnotateOverlapsFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.006s passed
testAnnotateOverlapsFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testAnnotateOverlapsFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.005s passed
testAnnotateOverlapsFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.007s passed
testAnnotateOverlapsFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.006s passed
testAnnotateOverlapsFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.007s passed
testAnnotateOverlapsFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.008s passed
testAnnotateOverlapsFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testAnnotateOverlapsFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.006s passed
testAnnotateOverlapsFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.007s passed
testAnnotateOverlapsFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.006s passed
testAnnotateOverlaps[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlaps[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlaps[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.001s passed
testAnnotateOverlaps[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.001s passed
testAnnotateOverlaps[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.002s passed
testAnnotateOverlaps[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.001s passed
testAnnotateOverlaps[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateOverlaps[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateOverlaps[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0s passed
testAnnotateOverlaps[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.001s passed
testAnnotateOverlaps[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlaps[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateOverlaps[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.001s passed
testAnnotateRsID[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateRsID[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.001s passed
testAnnotateRsID[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateRsID[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.001s passed
testAnnotateRsID[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0s passed
testAnnotateRsID[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.001s passed
testAnnotateRsID[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateRsID[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.001s passed
testAnnotateRsID[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0s passed
testAnnotateRsID[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateRsID[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateRsID[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.001s passed
testAnnotateRsID[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testCreateWithSpecialNames 0s passed
testRsIDFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testRsIDFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.004s passed
testRsIDFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.004s passed
testRsIDFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.004s passed
testRsIDFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.015s passed
testRsIDFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testRsIDFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testRsIDFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testRsIDFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testRsIDFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testRsIDFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testRsIDFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testRsIDFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.005s passed
testRsIDFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.005s passed
testRsIDFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.005s passed
testRsIDFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.005s passed
testRsIDFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed

Standard error

19:09:55.098 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
19:09:55.098 DEBUG GenomeLocParser -  1 (16000 bp)
19:09:55.098 DEBUG GenomeLocParser -  2 (16000 bp)
19:09:55.098 DEBUG GenomeLocParser -  3 (16000 bp)
19:09:55.098 DEBUG GenomeLocParser -  4 (16000 bp)
19:09:55.117 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.121 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.125 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.127 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.131 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.134 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.138 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.140 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.144 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.147 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.150 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.156 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.159 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.162 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.166 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.169 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.172 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.175 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.178 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.181 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.185 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.187 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.191 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.193 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.197 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.199 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.202 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.205 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.208 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.211 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.214 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.216 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.220 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.222 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.225 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.228 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.231 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.233 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.236 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.238 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.241 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.243 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.246 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.249 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.252 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.254 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.257 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.259 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.262 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.264 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.268 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.270 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.273 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.276 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.279 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.281 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.284 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.286 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.289 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.291 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.294 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.296 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.299 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.301 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.304 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.306 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.310 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.312 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.315 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.317 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.319 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.321 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.324 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.326 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.329 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.331 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.334 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.336 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.339 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.341 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.343 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.345 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.348 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.350 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.353 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.355 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.358 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.360 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.363 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.365 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.368 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.370 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.373 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.375 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.377 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.379 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.388 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.390 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.393 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.395 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.398 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.400 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.403 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.405 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.408 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.410 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.412 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.415 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.417 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.419 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.422 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.424 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.427 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.429 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.432 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.434 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.437 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.439 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.442 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.444 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.447 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.449 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.452 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.454 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.457 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.459 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.462 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.464 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.467 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.469 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.472 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.474 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.477 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.479 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.482 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.484 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.487 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.489 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.492 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.494 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.496 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.498 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.501 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.503 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.506 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.508 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.511 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.513 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.515 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.517 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.520 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.522 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.524 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.526 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.529 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.530 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.533 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.535 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.537 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.539 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.552 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.554 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.556 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.558 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.561 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.562 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.565 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.567 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.569 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.571 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.573 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.574 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.577 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.578 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.581 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.583 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.585 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.587 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.589 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.591 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.593 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.595 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.597 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.599 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.602 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.603 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.606 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.607 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.610 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.611 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.614 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.616 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.619 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.620 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.623 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.624 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.627 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.628 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.631 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.632 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.635 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.636 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.639 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.640 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.643 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.645 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.647 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.648 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.651 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.652 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.654 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.656 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.658 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.660 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.662 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.663 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.666 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.667 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.670 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.671 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.674 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.675 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.678 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.679 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.681 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.683 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.685 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.687 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.689 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.691 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.693 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.694 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.697 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.698 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.700 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.702 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.704 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.706 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.708 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
19:09:55.709 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf