Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.072s |
passed |
| testMultiSampleBam |
0.083s |
passed |
| testUrlEncoding |
0.094s |
passed |
Standard error
18:49:56.419 INFO GetSampleName - ------------------------------------------------------------
18:49:56.419 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
18:49:56.419 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
18:49:56.419 INFO GetSampleName - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:49:56.419 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:49:56.419 INFO GetSampleName - Start Date/Time: May 19, 2025 at 6:49:56 PM UTC
18:49:56.419 INFO GetSampleName - ------------------------------------------------------------
18:49:56.419 INFO GetSampleName - ------------------------------------------------------------
18:49:56.419 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:49:56.420 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:49:56.420 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:49:56.420 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:49:56.420 INFO GetSampleName - Deflater: IntelDeflater
18:49:56.420 INFO GetSampleName - Inflater: IntelInflater
18:49:56.420 INFO GetSampleName - GCS max retries/reopens: 20
18:49:56.420 INFO GetSampleName - Requester pays: disabled
18:49:56.420 INFO GetSampleName - Initializing engine
18:49:56.421 INFO GetSampleName - Done initializing engine
18:49:56.421 INFO ProgressMeter - Starting traversal
18:49:56.421 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
18:49:56.421 INFO ProgressMeter - unmapped 0.0 0 NaN
18:49:56.421 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
18:49:56.421 INFO GetSampleName - Shutting down engine
[May 19, 2025 at 6:49:56 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 6:49:56 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
18:49:56.598 INFO GetSampleName - ------------------------------------------------------------
18:49:56.599 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
18:49:56.599 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
18:49:56.599 INFO GetSampleName - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:49:56.599 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:49:56.599 INFO GetSampleName - Start Date/Time: May 19, 2025 at 6:49:56 PM UTC
18:49:56.599 INFO GetSampleName - ------------------------------------------------------------
18:49:56.599 INFO GetSampleName - ------------------------------------------------------------
18:49:56.599 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:49:56.599 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:49:56.599 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:49:56.599 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:49:56.599 INFO GetSampleName - Deflater: IntelDeflater
18:49:56.599 INFO GetSampleName - Inflater: IntelInflater
18:49:56.599 INFO GetSampleName - GCS max retries/reopens: 20
18:49:56.599 INFO GetSampleName - Requester pays: disabled
18:49:56.599 INFO GetSampleName - Initializing engine
18:49:56.600 INFO GetSampleName - Done initializing engine
18:49:56.600 INFO ProgressMeter - Starting traversal
18:49:56.600 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
18:49:56.600 INFO ProgressMeter - unmapped 0.0 0 NaN
18:49:56.601 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
18:49:56.601 INFO GetSampleName - Shutting down engine
[May 19, 2025 at 6:49:56 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000