Class org.broadinstitute.hellbender.tools.spark.PileupSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| testFeaturesPileupHdfs[0](false) |
1.568s |
passed |
| testFeaturesPileupHdfs[1](true) |
1.611s |
passed |
| testFeaturesPileup[0](false) |
0.906s |
passed |
| testFeaturesPileup[1](true) |
0.415s |
passed |
| testInsertLengthPileup[0](false) |
0.428s |
passed |
| testInsertLengthPileup[1](true) |
0.389s |
passed |
| testSimplePileup[0](false) |
0.465s |
passed |
| testSimplePileup[1](true) |
0.338s |
passed |
| testVerbosePileup[0](false) |
0.439s |
passed |
| testVerbosePileup[1](true) |
0.333s |
passed |
Standard error
[May 19, 2025 at 6:58:25 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=905969664
[May 19, 2025 at 6:58:26 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=905969664
[May 19, 2025 at 6:58:27 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=905969664
18:58:27.552 ERROR DataNode - Command processor encountered interrupt and exit.
[May 19, 2025 at 6:58:29 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=859832320
18:58:29.168 ERROR DataNode - Command processor encountered interrupt and exit.
[May 19, 2025 at 6:58:29 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:30 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:30 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:30 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:31 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:31 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320