Class org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmersSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| testBadInputs[0](kmer-size, 0) |
0.091s |
passed |
| testBadInputs[1](kmer-size, 2) |
0.069s |
passed |
| testBadInputs[2](kmer-size, 32) |
0.068s |
passed |
| testBadInputs[3](kmer-size, 33) |
0.067s |
passed |
| testBadInputs[4](bloom-false-positive-probability, -0.1) |
0.063s |
passed |
| testBadInputs[5](bloom-false-positive-probability, 1) |
0.077s |
passed |
| testBadInputs[6](kmer-mask, 0,32) |
0.071s |
passed |
| testBadInputs[7](kmer-mask, -1,15) |
0.066s |
passed |
| testBadInputs[8](kmer-spacing, 0) |
0.063s |
passed |
| testBloomFilterFromFasta |
0.087s |
passed |
| testHopscotchSetFromFasta |
0.092s |
passed |
| testMaskedHopscotchSetFromFasta |
0.082s |
passed |
Standard error
[May 19, 2025 at 6:58:44 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmers done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:44 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmers done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:44 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmers done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:44 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmers done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:44 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmers done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:44 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmers done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320
[May 19, 2025 at 6:58:44 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildKmers done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=859832320