Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.085s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.233s passed
testCountVariantsWithIntervals[10](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.244s passed
testCountVariantsWithIntervals[11](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.219s passed
testCountVariantsWithIntervals[1](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.229s passed
testCountVariantsWithIntervals[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.220s passed
testCountVariantsWithIntervals[3](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.222s passed
testCountVariantsWithIntervals[4](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.222s passed
testCountVariantsWithIntervals[5](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.219s passed
testCountVariantsWithIntervals[6](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.217s passed
testCountVariantsWithIntervals[7](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.241s passed
testCountVariantsWithIntervals[8](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.235s passed
testCountVariantsWithIntervals[9](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.229s passed
testNoNPRWhenOutputIsUnspecified 0.083s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.088s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.087s passed
test[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.097s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[May 19, 2025 at 6:59:14 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:14 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:17 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:17 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:17 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:17 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:18 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:18 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:18 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:18 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752
[May 19, 2025 at 6:59:19 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1679818752