Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.250s |
passed |
| testASEReadCounterImproperPairs |
3.049s |
passed |
| testASEReadCounterMinDepth70 |
0.178s |
passed |
| testASEReadCounterMultipleContexts |
0.120s |
passed |
| testASEReadCounterNonRefAllele |
0.117s |
passed |
| testASEReadCounterWarnings |
0.180s |
passed |
| testASEReadCounterWithCountOverlaps |
0.181s |
passed |
| testASEReadCounterWithCountReads |
0.178s |
passed |
| testASEReadCounterWithHighMQ |
0.176s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.180s |
passed |
| testASEReadCounterWithLowMQ |
0.177s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.189s |
passed |
Standard output
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[19:07:21] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[19:07:21] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[19:07:24] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:07:25] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:07:25] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:07:25] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:07:25] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:07:25] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[19:07:25] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 19, 2025 at 7:07:21 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440
[May 19, 2025 at 7:07:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1772093440