Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
10.797s |
passed |
| testSplitsFixNDN |
0.097s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.399s |
passed |
| testSplitsTargetRegionFunctionality |
0.261s |
passed |
| testSplitsWithOverhangs |
0.384s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.351s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.338s |
passed |
| testSplitsWithOverhangsNotClipping |
0.344s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.378s |
passed |
Standard output
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[19:07:50] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[19:07:50] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[19:07:51] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[19:07:51] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[19:07:52] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[19:07:52] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
--------------------------------------------------------------------------------
[19:07:52] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[19:07:53] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 19, 2025 at 7:07:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.18 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:51 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:51 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 7:07:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=721420288