Class org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest

all > org.broadinstitute.hellbender.engine > LocusWalkerByIntervalUnitTest
tests
failures
ignored
0.158s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testOverlappingBasesCoverageInformation[0]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@591dd039, [I@597f9d91)	0.025s	passed
testOverlappingBasesCoverageInformation[10]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@189f5ed8, [I@492c1b1b)	0.009s	passed
testOverlappingBasesCoverageInformation[11]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@65dac812, [I@3619ecd)	0.009s	passed
testOverlappingBasesCoverageInformation[12]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@35d128fd, [I@39a809db)	0.009s	passed
testOverlappingBasesCoverageInformation[1]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@1caf77f6, [I@246f9fa8)	0.012s	passed
testOverlappingBasesCoverageInformation[2]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@53e7cc08, [I@4b45016d)	0.010s	passed
testOverlappingBasesCoverageInformation[3]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4cdd0f2f, [I@17cea679)	0.012s	passed
testOverlappingBasesCoverageInformation[4]([20:1000-2000, 20:2001-3000], [Lhtsjdk.samtools.util.Locatable;@5a6dd1e7, [I@4fd9deed)	0.011s	passed
testOverlappingBasesCoverageInformation[5]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@74de1e9d, [I@43b9ef41)	0.010s	passed
testOverlappingBasesCoverageInformation[6]([20:1000-2000, 21:3001-4000], [Lhtsjdk.samtools.util.Locatable;@5125558b, [I@8c940e2)	0.012s	passed
testOverlappingBasesCoverageInformation[7]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@1871068d, [I@6ab123d0)	0.017s	passed
testOverlappingBasesCoverageInformation[8]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@704c3ca2, [I@7d3a9061)	0.011s	passed
testOverlappingBasesCoverageInformation[9]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@1da77a43, [I@63604641)	0.011s	passed
Standard error

18:46:04.231 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.231 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.231 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.231 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.231 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.231 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.231 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.231 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.232 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.232 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.232 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.232 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.232 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.232 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.232 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.232 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.232 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.233 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.234 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.234 INFO  ProgressMeter - Starting traversal
18:46:04.234 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.250 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.250 INFO  ProgressMeter -              20:1999              0.0                  1001        3753750.0
18:46:04.251 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.251 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.256 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.257 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.257 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.257 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.257 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.257 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.257 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.257 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.257 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.257 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.257 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.257 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.258 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.258 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.258 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.258 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.258 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.259 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.259 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.260 INFO  ProgressMeter - Starting traversal
18:46:04.260 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.262 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.263 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
18:46:04.263 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.263 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.268 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.268 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.268 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.268 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.268 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.268 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.268 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.268 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.268 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.268 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.268 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.268 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.268 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.268 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.268 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.268 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.268 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.270 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.270 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.270 INFO  ProgressMeter - Starting traversal
18:46:04.270 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.272 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.273 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
18:46:04.273 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.273 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.279 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.279 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.279 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.279 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.279 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.279 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.279 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.279 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.279 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.279 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.279 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.279 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.279 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.279 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.279 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.279 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.279 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.281 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.281 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.281 INFO  ProgressMeter - Starting traversal
18:46:04.281 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.284 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.284 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
18:46:04.284 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.284 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.290 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.290 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.290 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.291 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.291 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.291 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.291 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.291 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.291 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.291 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.291 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.291 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.291 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.291 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.291 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.291 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.291 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.292 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
18:46:04.292 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.293 INFO  ProgressMeter - Starting traversal
18:46:04.293 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.296 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.296 INFO  ProgressMeter -              20:2999              0.0                  2001       40020000.0
18:46:04.296 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
18:46:04.296 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.300 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.301 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.301 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.301 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.301 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.301 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.301 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.301 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.301 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.301 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.301 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.301 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.301 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.301 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.301 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.301 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.301 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.303 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
18:46:04.303 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.303 INFO  ProgressMeter - Starting traversal
18:46:04.303 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.306 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.306 INFO  ProgressMeter -              20:3999              0.0                  2001       40020000.0
18:46:04.306 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
18:46:04.306 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.311 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.311 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.311 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.312 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.312 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.312 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.312 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.312 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.312 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.312 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.312 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.312 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.312 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.312 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.312 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.312 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.312 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.314 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
18:46:04.314 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.314 INFO  ProgressMeter - Starting traversal
18:46:04.314 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.318 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.318 INFO  ProgressMeter -              21:3999              0.0                  2001       30015000.0
18:46:04.318 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
18:46:04.318 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.323 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.323 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.324 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.324 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.324 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.324 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.324 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.324 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.324 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.324 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.324 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.324 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.324 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.324 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.324 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.324 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.324 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.326 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
18:46:04.326 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.326 INFO  ProgressMeter - Starting traversal
18:46:04.326 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.336 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.336 INFO  ProgressMeter -              20:3999              0.0                  2001       12006000.0
18:46:04.336 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
18:46:04.336 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.341 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.341 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.341 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.341 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.342 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.342 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.342 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.342 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.342 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.342 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.342 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.342 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.342 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.342 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.342 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.342 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.342 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.344 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.344 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.344 INFO  ProgressMeter - Starting traversal
18:46:04.344 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.346 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.346 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
18:46:04.346 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.347 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.353 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.353 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.353 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.353 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.353 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.353 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.353 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.353 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.353 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.353 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.353 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.353 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.353 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.353 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.353 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.353 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.353 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.355 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.355 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.355 INFO  ProgressMeter - Starting traversal
18:46:04.355 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.357 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.357 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
18:46:04.357 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.357 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.363 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.363 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.363 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.363 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.363 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.363 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.363 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.363 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.363 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.363 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.363 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.363 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.363 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.364 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.364 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.364 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.364 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.365 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.365 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.365 INFO  ProgressMeter - Starting traversal
18:46:04.365 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.366 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.366 INFO  ProgressMeter -              20:1999              0.0                  1001       60060000.0
18:46:04.367 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.367 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.371 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.371 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.371 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.371 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.371 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.371 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.371 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.371 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.372 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.372 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.372 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.372 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.372 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.372 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.372 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.372 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.372 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.373 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.373 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.373 INFO  ProgressMeter - Starting traversal
18:46:04.374 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.376 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.376 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
18:46:04.376 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.376 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
18:46:04.381 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.381 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
18:46:04.381 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:46:04.381 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:46:04.381 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:46:04.381 INFO  TestTransformedLocusWalker - Start Date/Time: May 19, 2025 at 6:46:04 PM UTC
18:46:04.381 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.381 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
18:46:04.381 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:46:04.381 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:46:04.381 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:46:04.382 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:46:04.382 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
18:46:04.382 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
18:46:04.382 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
18:46:04.382 INFO  TestTransformedLocusWalker - Requester pays: disabled
18:46:04.382 INFO  TestTransformedLocusWalker - Initializing engine
18:46:04.383 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
18:46:04.383 INFO  TestTransformedLocusWalker - Done initializing engine
18:46:04.383 INFO  ProgressMeter - Starting traversal
18:46:04.383 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
18:46:04.384 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
18:46:04.385 INFO  ProgressMeter -              20:1999              0.0                  1001       60060000.0
18:46:04.385 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
18:46:04.385 INFO  TestTransformedLocusWalker - Shutting down engine
[May 19, 2025 at 6:46:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600