Class org.broadinstitute.hellbender.utils.fasta.CachingIndexedFastaSequenceFileUnitTest

40

tests

0

failures

0

ignored

17.987s

duration

100%

successful

Tests

Test Duration Result
testCachingIndexedFastaReaderSequential1[0](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.202s passed
testCachingIndexedFastaReaderSequential1[10](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.084s passed
testCachingIndexedFastaReaderSequential1[11](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.124s passed
testCachingIndexedFastaReaderSequential1[12](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.184s passed
testCachingIndexedFastaReaderSequential1[13](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.187s passed
testCachingIndexedFastaReaderSequential1[14](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 9.660s passed
testCachingIndexedFastaReaderSequential1[15](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.095s passed
testCachingIndexedFastaReaderSequential1[16](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.094s passed
testCachingIndexedFastaReaderSequential1[17](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.105s passed
testCachingIndexedFastaReaderSequential1[1](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.102s passed
testCachingIndexedFastaReaderSequential1[2](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.096s passed
testCachingIndexedFastaReaderSequential1[3](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.092s passed
testCachingIndexedFastaReaderSequential1[4](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.085s passed
testCachingIndexedFastaReaderSequential1[5](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.182s passed
testCachingIndexedFastaReaderSequential1[6](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.083s passed
testCachingIndexedFastaReaderSequential1[7](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.087s passed
testCachingIndexedFastaReaderSequential1[8](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.096s passed
testCachingIndexedFastaReaderSequential1[9](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.147s passed
testCachingIndexedFastaReaderTwoStage[0](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.017s passed
testCachingIndexedFastaReaderTwoStage[10](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.015s passed
testCachingIndexedFastaReaderTwoStage[11](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.013s passed
testCachingIndexedFastaReaderTwoStage[12](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.957s passed
testCachingIndexedFastaReaderTwoStage[13](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.960s passed
testCachingIndexedFastaReaderTwoStage[14](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.981s passed
testCachingIndexedFastaReaderTwoStage[15](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.991s passed
testCachingIndexedFastaReaderTwoStage[16](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 1.021s passed
testCachingIndexedFastaReaderTwoStage[17](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 1.019s passed
testCachingIndexedFastaReaderTwoStage[1](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.014s passed
testCachingIndexedFastaReaderTwoStage[2](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.015s passed
testCachingIndexedFastaReaderTwoStage[3](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.032s passed
testCachingIndexedFastaReaderTwoStage[4](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.033s passed
testCachingIndexedFastaReaderTwoStage[5](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.032s passed
testCachingIndexedFastaReaderTwoStage[6](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.042s passed
testCachingIndexedFastaReaderTwoStage[7](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.039s passed
testCachingIndexedFastaReaderTwoStage[8](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.071s passed
testCachingIndexedFastaReaderTwoStage[9](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.011s passed
testFailOnBadBase 0.007s passed
testIupacChanges 0.003s passed
testMixedCasesInExample 0.008s passed
testNonexistentReference 0.001s passed