| Test |
Duration |
Result |
| testCreate[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp6812848756704732243.tar.gz, true, MODERATE) |
0.002s |
passed |
| testCreate[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp212052057877390768950.fasta, false, MODERATE) |
0s |
passed |
| testCreate[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp32319373218593725261.vcf, true, MINIMAL) |
0.001s |
passed |
| testCreate[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp48408282596201250530.fasta, false, MINIMAL) |
0s |
passed |
| testCreate[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp59237262546430102299.vcf, null, MINIMAL) |
0s |
passed |
| testCreate[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp616619093338905851739.xsv, false, null) |
0s |
passed |
| testCreate[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp713522143995131016885.vcf, null, null) |
0s |
passed |
| testGetDest[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17372815354031706797.tar.gz, true, MODERATE) |
0s |
passed |
| testGetDest[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp214114861618104486802.fasta, false, MODERATE) |
0s |
passed |
| testGetDest[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp3430427227262868018.vcf, true, MINIMAL) |
0.001s |
passed |
| testGetDest[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp410833382373226221463.fasta, false, MINIMAL) |
0s |
passed |
| testGetDest[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp515313986433275837669.vcf, null, MINIMAL) |
0s |
passed |
| testGetDest[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp611766305094599095874.xsv, false, null) |
0s |
passed |
| testGetDest[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp7191445822600395047.vcf, null, null) |
0.001s |
passed |
| testGetSource[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4261939187505860536.tar.gz, true, MODERATE) |
0.001s |
passed |
| testGetSource[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp23240595956315902153.fasta, false, MODERATE) |
0s |
passed |
| testGetSource[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp31687372133157613.vcf, true, MINIMAL) |
0s |
passed |
| testGetSource[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp42186182111914130229.fasta, false, MINIMAL) |
0.001s |
passed |
| testGetSource[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp58538534562071198305.vcf, null, MINIMAL) |
0s |
passed |
| testGetSource[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp65101134273343658058.xsv, false, null) |
0s |
passed |
| testGetSource[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp74664833548181230998.vcf, null, null) |
0s |
passed |
| testIsDoLogProgress[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4569915140802871914.tar.gz, true, MODERATE) |
0.001s |
passed |
| testIsDoLogProgress[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp212258360618794735050.fasta, false, MODERATE) |
0s |
passed |
| testIsDoLogProgress[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp31927145275989772565.vcf, true, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp412651560738196737065.fasta, false, MINIMAL) |
0.001s |
passed |
| testIsDoLogProgress[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp51697987882355982134.vcf, null, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp69297532567786834050.xsv, false, null) |
0s |
passed |
| testIsDoLogProgress[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp75195242118767758127.vcf, null, null) |
0s |
passed |
| testIsOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp15972913861152404592.tar.gz, true, MODERATE) |
0.001s |
passed |
| testIsOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp28981342555890593137.fasta, false, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp37245934684123872109.vcf, true, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp42779718062158015640.fasta, false, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp515057901345131579925.vcf, null, MINIMAL) |
0.001s |
passed |
| testIsOverwriteExisting[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp66490509712091539516.xsv, false, null) |
0s |
passed |
| testIsOverwriteExisting[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp711991374203414841533.vcf, null, null) |
0s |
passed |
| testSetOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp10368180057350209390.tar.gz, false, MODERATE, false) |
0s |
passed |
| testSetOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp8556536528956009728.tar.gz, true, MODERATE, true) |
0s |
passed |
| testSetVerbosity[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp468638859480990646.tar.gz, true, MODERATE, MODERATE) |
0s |
passed |
| testSetVerbosity[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp7892385371863799305.tar.gz, true, MINIMAL, MINIMAL) |
0.001s |
passed |
| testSetVerbosity[2](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4460662611886226467.tar.gz, true, SILENT, SILENT) |
0s |
passed |
| testSetVerbosity[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp10353238598402753837.tar.gz, true, VERBOSE, VERBOSE) |
0s |
passed |
| testSetVerbosity[4](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp12122540167997679799.tar.gz, true, null, MODERATE) |
0s |
passed |