Class org.broadinstitute.hellbender.PrintFileDiagnosticsIntegrationTest

all > org.broadinstitute.hellbender > PrintFileDiagnosticsIntegrationTest
3

tests
0

failures
0

ignored
0.333s

duration
100%

successful

Tests

Test Duration Result
testFileDiagnostics[0](src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, [(count-limit,10)], src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.txt) 0.144s passed
testFileDiagnostics[1](src/test/resources/org/broadinstitute/hellbender/metrics/analysis/MeanQualityByCycle/example_pfFail_reads.bam.bai, null, src/test/resources/filediagnostics/example_pfFail_reads.bam.bai.txt) 0.109s passed
testFileDiagnostics[2](src/test/resources/org/broadinstitute/hellbender/engine/cram_with_crai_index.cram.crai, null, src/test/resources/filediagnostics/cram_with_crai_index.cram.crai.txt) 0.080s passed

Standard output

src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram
src/test/resources/org/broadinstitute/hellbender/metrics/analysis/MeanQualityByCycle/example_pfFail_reads.bam.bai

Output written to /tmp/testFileDiagnostics13921438667844014518.txt


src/test/resources/org/broadinstitute/hellbender/engine/cram_with_crai_index.cram.crai

Standard error

[June 12, 2025 at 8:46:34 PM GMT] org.broadinstitute.hellbender.tools.PrintFileDiagnostics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:46:34 PM GMT] org.broadinstitute.hellbender.tools.PrintFileDiagnostics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:46:34 PM GMT] org.broadinstitute.hellbender.tools.PrintFileDiagnostics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000