Class org.broadinstitute.hellbender.engine.GatkToolIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testBrokenReferenceDictionaryErrorMessage | 0.129s | passed |
| testSharding | 0.111s | passed |
| testSitesOnlyMode | 0.103s | passed |
| testVcfOutputFilterMode[0]([1:101-10001, 2:201-20001], [], ANYWHERE, [1:10-15, 1:100-105, 1:1000-1005, 1:10000-10005, 2:20-25, 2:200-205, 2:2000-2005, 2:20000-20005, 3:20000-20000]) | 0.112s | passed |
| testVcfOutputFilterMode[10]([1:99-110], [], STARTS_IN, [1:100-105]) | 0.088s | passed |
| testVcfOutputFilterMode[11]([1:100-110], [], STARTS_IN, [1:100-105]) | 0.088s | passed |
| testVcfOutputFilterMode[12]([1:101-110], [], STARTS_IN, []) | 0.094s | passed |
| testVcfOutputFilterMode[13]([3:19999-19999], [], STARTS_IN, []) | 0.093s | passed |
| testVcfOutputFilterMode[14]([3:20000-20000], [], STARTS_IN, [3:20000-20000]) | 0.091s | passed |
| testVcfOutputFilterMode[15]([3:20001-20001], [], STARTS_IN, []) | 0.088s | passed |
| testVcfOutputFilterMode[16]([3:19999-19999], [], ENDS_IN, []) | 0.091s | passed |
| testVcfOutputFilterMode[17]([3:20000-20000], [], ENDS_IN, [3:20000-20000]) | 0.091s | passed |
| testVcfOutputFilterMode[18]([3:20001-20001], [], ENDS_IN, []) | 0.087s | passed |
| testVcfOutputFilterMode[1]([1:101-10001, 2:201-20001], [], OVERLAPS, [1:100-105, 1:1000-1005, 1:10000-10005, 2:200-205, 2:2000-2005, 2:20000-20005]) | 0.103s | passed |
| testVcfOutputFilterMode[2]([1:101-10001, 2:201-20001], [], STARTS_IN, [1:1000-1005, 1:10000-10005, 2:2000-2005, 2:20000-20005]) | 0.095s | passed |
| testVcfOutputFilterMode[3]([1:101-10001, 2:201-20001], [], ENDS_IN, [1:100-105, 1:1000-1005, 2:200-205, 2:2000-2005]) | 0.088s | passed |
| testVcfOutputFilterMode[4]([1:101-10001, 2:201-20001], [], CONTAINED, [1:1000-1005, 2:2000-2005]) | 0.097s | passed |
| testVcfOutputFilterMode[5]([1:99-102, 1:103-110], [], CONTAINED, [1:100-105]) | 0.091s | passed |
| testVcfOutputFilterMode[6]([1:99-102, 1:103-110], [--interval-merging-rule, ALL], CONTAINED, [1:100-105]) | 0.088s | passed |
| testVcfOutputFilterMode[7]([1:99-102, 1:103-110], [--interval-merging-rule, OVERLAPPING_ONLY], CONTAINED, []) | 0.090s | passed |
| testVcfOutputFilterMode[8]([1:99-102, 1:104-110], [--interval-merging-rule, OVERLAPPING_ONLY], CONTAINED, []) | 0.089s | passed |
| testVcfOutputFilterMode[9]([1:99-102, 1:104-110], [--interval-merging-rule, OVERLAPPING_ONLY, --interval-padding, 10], CONTAINED, [1:100-105]) | 0.094s | passed |
Standard error
[June 12, 2025 at 8:47:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:55 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640 [June 12, 2025 at 8:47:56 PM GMT] org.broadinstitute.hellbender.engine.GatkToolIntegrationTest$VariantEmitter done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1981808640