Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
0.332s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.020s	passed
testGetCompatibleHeader	0.027s	passed
testGetConflictingHeader	0.019s	passed
testIteratorOverlapping	0.022s	passed
testNoDictionaryForAllInputs	0.021s	passed
testNoDictionaryForOneInput	0.020s	passed
testNoDictionaryForOnlyInput	0.018s	passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.025s	passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.024s	passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.020s	passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.028s	passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.025s	passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.021s	passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.021s	passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.021s	passed
Standard error

20:47:58.929 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.929 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:58.929 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:58.930 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:58.930 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:58.930 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:58 PM GMT
20:47:58.930 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.930 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.930 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:58.930 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:58.930 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:58.930 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:58.930 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:58.930 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:58.930 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:58.930 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:58.930 INFO  TestMultiVariantWalker - Initializing engine
20:47:58.933 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:47:58.934 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:58 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:58.950 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.950 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:58.950 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:58.950 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:58.950 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:58.950 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:58 PM GMT
20:47:58.950 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.950 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.950 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:58.950 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:58.950 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:58.950 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:58.950 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:58.950 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:58.950 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:58.951 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:58.951 INFO  TestMultiVariantWalker - Initializing engine
20:47:58.952 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:47:58.953 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:47:58.958 INFO  TestMultiVariantWalker - Done initializing engine
20:47:58.958 INFO  ProgressMeter - Starting traversal
20:47:58.958 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:58.962 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
20:47:58.962 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:47:58.962 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:58 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:58.977 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.977 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:58.977 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:58.977 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:58.977 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:58.977 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:58 PM GMT
20:47:58.978 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.978 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:58.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:58.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:58.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:58.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:58.978 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:58.978 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:58.978 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:58.978 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:58.978 INFO  TestMultiVariantWalker - Initializing engine
20:47:58.979 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:47:58.980 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
20:47:58.982 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:58 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:58.996 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
20:47:58.997 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:58.997 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:58.997 INFO  TestMultiVariantWalkerIterator - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:58.997 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:58.997 INFO  TestMultiVariantWalkerIterator - Start Date/Time: June 12, 2025 at 8:47:58 PM GMT
20:47:58.997 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
20:47:58.997 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
20:47:58.997 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:58.998 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:58.998 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:58.998 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:58.998 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
20:47:58.998 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
20:47:58.998 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
20:47:58.998 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
20:47:58.998 INFO  TestMultiVariantWalkerIterator - Initializing engine
20:47:58.999 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
20:47:59.001 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
20:47:59.002 INFO  TestMultiVariantWalkerIterator - Done initializing engine
20:47:59.002 INFO  ProgressMeter - Starting traversal
20:47:59.002 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.004 INFO  ProgressMeter -             unmapped              0.0                    28         Infinity
20:47:59.004 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
20:47:59.004 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.019 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.019 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.019 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.019 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.019 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.020 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.020 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.020 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.020 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.020 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.020 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.020 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.020 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.020 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.020 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.020 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.020 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.022 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
20:47:59.023 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
20:47:59.024 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
20:47:59.024 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
20:47:59.025 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.038 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.038 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.038 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.039 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.039 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.039 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.039 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.039 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.039 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.039 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.039 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.039 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.039 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.039 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.039 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.039 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.039 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.040 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:47:59.041 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
20:47:59.042 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
20:47:59.043 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.043 INFO  ProgressMeter - Starting traversal
20:47:59.043 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.044 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
20:47:59.044 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:47:59.044 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.058 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.058 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.059 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.059 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.059 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.059 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.059 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.059 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.059 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.059 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.059 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.059 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.059 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.059 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.059 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.059 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.059 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.060 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
20:47:59.061 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
20:47:59.061 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.062 INFO  ProgressMeter - Starting traversal
20:47:59.062 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.062 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
20:47:59.062 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
20:47:59.062 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.084 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.084 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.084 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.084 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.084 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.084 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.084 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.084 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.084 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.084 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.084 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.084 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.084 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.084 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.085 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.085 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.085 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.086 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:47:59.087 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.087 INFO  ProgressMeter - Starting traversal
20:47:59.087 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.088 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
20:47:59.088 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:47:59.088 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.108 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.108 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.108 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.109 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.109 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.109 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.109 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.109 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.109 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.109 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.109 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.109 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.109 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.109 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.109 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.109 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.109 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.110 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:47:59.111 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.111 INFO  ProgressMeter - Starting traversal
20:47:59.112 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.112 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
20:47:59.112 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
20:47:59.112 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.127 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.127 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.127 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.127 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.127 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.127 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.127 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.127 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.127 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.127 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.127 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.127 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.127 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.127 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.127 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.127 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.127 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.128 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:47:59.130 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:47:59.132 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.132 INFO  ProgressMeter - Starting traversal
20:47:59.132 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.133 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
20:47:59.133 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:47:59.133 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.153 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.154 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.154 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.154 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.154 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.154 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.154 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.154 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.154 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.154 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.154 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.154 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.154 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.154 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.154 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.154 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.154 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.156 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
20:47:59.157 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
20:47:59.159 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.159 INFO  ProgressMeter - Starting traversal
20:47:59.159 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.161 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
20:47:59.161 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:47:59.161 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.181 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.181 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.181 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.181 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.181 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.181 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.181 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.181 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.182 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.182 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.182 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.182 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.182 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.182 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.182 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.182 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.182 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.183 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:47:59.184 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
20:47:59.184 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.184 INFO  ProgressMeter - Starting traversal
20:47:59.185 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.185 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
20:47:59.185 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
20:47:59.185 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.203 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.203 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.203 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.203 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.203 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.203 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.203 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.203 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.203 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.203 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.203 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.203 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.203 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.203 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.204 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.204 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.204 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.205 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:47:59.206 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
20:47:59.206 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.206 INFO  ProgressMeter - Starting traversal
20:47:59.206 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.206 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
20:47:59.206 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
20:47:59.206 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.221 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.222 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.222 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.222 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.222 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.222 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.222 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.222 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.222 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.222 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.222 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.222 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.222 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.223 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:47:59.225 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:47:59.227 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
20:47:59.227 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.227 INFO  ProgressMeter - Starting traversal
20:47:59.227 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.228 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
20:47:59.228 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
20:47:59.228 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
20:47:59.242 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.242 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:47:59.242 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:47:59.242 INFO  TestMultiVariantWalker - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:47:59.242 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:47:59.242 INFO  TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:47:59 PM GMT
20:47:59.243 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.243 INFO  TestMultiVariantWalker - ------------------------------------------------------------
20:47:59.243 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:47:59.243 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:47:59.243 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:47:59.243 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:47:59.243 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
20:47:59.243 INFO  TestMultiVariantWalker - Inflater: IntelInflater
20:47:59.243 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
20:47:59.243 INFO  TestMultiVariantWalker - Requester pays: disabled
20:47:59.243 INFO  TestMultiVariantWalker - Initializing engine
20:47:59.244 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:47:59.246 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:47:59.248 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
20:47:59.248 INFO  TestMultiVariantWalker - Done initializing engine
20:47:59.248 INFO  ProgressMeter - Starting traversal
20:47:59.248 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:47:59.248 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
20:47:59.248 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
20:47:59.249 INFO  TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:47:59 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640