Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.099s |
passed |
| testMultiSampleBam |
0.111s |
passed |
| testUrlEncoding |
0.097s |
passed |
Standard error
20:50:42.382 INFO GetSampleName - ------------------------------------------------------------
20:50:42.382 INFO GetSampleName - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:50:42.382 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
20:50:42.382 INFO GetSampleName - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:50:42.382 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:50:42.382 INFO GetSampleName - Start Date/Time: June 12, 2025 at 8:50:42 PM GMT
20:50:42.383 INFO GetSampleName - ------------------------------------------------------------
20:50:42.383 INFO GetSampleName - ------------------------------------------------------------
20:50:42.383 INFO GetSampleName - HTSJDK Version: 4.2.0
20:50:42.383 INFO GetSampleName - Picard Version: 3.4.0
20:50:42.383 INFO GetSampleName - Built for Spark Version: 3.5.0
20:50:42.383 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:50:42.383 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:50:42.383 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:50:42.383 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:50:42.383 INFO GetSampleName - Deflater: IntelDeflater
20:50:42.383 INFO GetSampleName - Inflater: IntelInflater
20:50:42.383 INFO GetSampleName - GCS max retries/reopens: 20
20:50:42.383 INFO GetSampleName - Requester pays: disabled
20:50:42.383 INFO GetSampleName - Initializing engine
20:50:42.384 INFO GetSampleName - Done initializing engine
20:50:42.385 INFO ProgressMeter - Starting traversal
20:50:42.385 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
20:50:42.385 INFO ProgressMeter - unmapped 0.0 0 NaN
20:50:42.385 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
20:50:42.385 INFO GetSampleName - Shutting down engine
[June 12, 2025 at 8:50:42 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:42 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
20:50:42.593 INFO GetSampleName - ------------------------------------------------------------
20:50:42.593 INFO GetSampleName - The Genome Analysis Toolkit (GATK) v4.6.2.0-8-g092bdf2-SNAPSHOT
20:50:42.593 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
20:50:42.593 INFO GetSampleName - Executing as root@e24cea241624 on Linux v6.11.0-1015-azure amd64
20:50:42.593 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
20:50:42.593 INFO GetSampleName - Start Date/Time: June 12, 2025 at 8:50:42 PM GMT
20:50:42.593 INFO GetSampleName - ------------------------------------------------------------
20:50:42.593 INFO GetSampleName - ------------------------------------------------------------
20:50:42.593 INFO GetSampleName - HTSJDK Version: 4.2.0
20:50:42.593 INFO GetSampleName - Picard Version: 3.4.0
20:50:42.593 INFO GetSampleName - Built for Spark Version: 3.5.0
20:50:42.593 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:50:42.593 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:50:42.593 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:50:42.594 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:50:42.594 INFO GetSampleName - Deflater: IntelDeflater
20:50:42.594 INFO GetSampleName - Inflater: IntelInflater
20:50:42.594 INFO GetSampleName - GCS max retries/reopens: 20
20:50:42.594 INFO GetSampleName - Requester pays: disabled
20:50:42.594 INFO GetSampleName - Initializing engine
20:50:42.595 INFO GetSampleName - Done initializing engine
20:50:42.595 INFO ProgressMeter - Starting traversal
20:50:42.595 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
20:50:42.595 INFO ProgressMeter - unmapped 0.0 0 NaN
20:50:42.595 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
20:50:42.595 INFO GetSampleName - Shutting down engine
[June 12, 2025 at 8:50:42 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000