Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.084s |
passed |
| testBedGZIndex |
0.096s |
passed |
| testBedIndex |
0.087s |
passed |
| testCompressedBCF2_2Index |
0.084s |
passed |
| testEnsemblGtfIndex |
0.300s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@644053d3, [Ljava.lang.String;@16c1fc82, [Ljava.lang.String;@66692051) |
0.005s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@25dd6bc9, [Ljava.lang.String;@152bb1ee, [Ljava.lang.String;@5ad0a620) |
0.003s |
passed |
| testGVCFIndex |
0.128s |
passed |
| testGVCFTreatedAsVCFIndex |
0.089s |
passed |
| testIndexBCFFileGZ |
0.088s |
passed |
| testIndexNonFeatureFileGZ |
0.078s |
passed |
| testNewGencodeLiftoverGtfFile |
0.096s |
passed |
| testSAMPileupGZIndex |
0.100s |
passed |
| testUncompressedBCF2_2Index |
0.100s |
passed |
| testVCFGZIPIndex |
0.084s |
passed |
| testVCFGZIPIndex_inferredName |
0.080s |
passed |
| testVCFGZIndex_inferredName |
0.080s |
passed |
| testVCFGZIndex_tabix |
0.085s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.084s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.114s |
passed |
| testVCFIndex |
0.107s |
passed |
| testVCFIndex_cannotWrite |
0.085s |
passed |
| testVCFIndex_inferredName |
0.085s |
passed |
| testVCFIndex_missingFile |
0.076s |
passed |
| testVCFWithNoRecords |
0.085s |
passed |
Standard error
[June 12, 2025 at 8:50:45 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:45 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:45 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:45 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:45 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:45 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:47 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:47 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:47 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:47 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:47 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000