Class org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibilityIntegrationTest

all > org.broadinstitute.hellbender.tools.reference > CheckReferenceCompatibilityIntegrationTest
16

tests
0

failures
0

ignored
1.476s

duration
100%

successful

Tests

Test Duration Result
testReferenceCompatibilityBAMWithMD5s[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withmd5s.bam, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityBAMWithMD5s_exactmatch.table) 0.097s passed
testReferenceCompatibilityBAMWithMD5s[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withmd5s_missingchr1.bam, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityBAMWithMD5s_subset.table) 0.101s passed
testReferenceCompatibilityBAMWithMD5s[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_missingchr3.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withmd5s.bam, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityBAMWithMD5s_notcompatible.table) 0.098s passed
testReferenceCompatibilityBAMWithoutMD5s[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withoutmd5s.bam, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityBAMWithoutMD5s_compatible.table) 0.088s passed
testReferenceCompatibilityBAMWithoutMD5s[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withoutmd5s_missingchr1.bam, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityBAMWithoutMD5s_subset.table) 0.091s passed
testReferenceCompatibilityBAMWithoutMD5s[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_missingchr3.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withoutmd5s.bam, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityBAMWithoutMD5s_notcompatible.table) 0.093s passed
testReferenceCompatibilityBAMandVCF 0.088s passed
testReferenceCompatibilityMultipleBAMs 0.090s passed
testReferenceCompatibilityMultipleReferencesBAMWithMD5s 0.095s passed
testReferenceCompatibilityMultipleReferencesBAMWithoutMD5s 0.091s passed
testReferenceCompatibilityNoBAMOrVCF 0.087s passed
testReferenceCompatibilityVCFWithMD5s 0.094s passed
testReferenceCompatibilityVCFWithoutMD5s[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/example_variants_withSequenceDict_withoutmd5s.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityVCFWithoutMD5s_match.table) 0.092s passed
testReferenceCompatibilityVCFWithoutMD5s[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/example_variants_withSequenceDict_withoutmd5s_missingchr1.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityVCFWithoutMD5s_subset.table) 0.090s passed
testReferenceCompatibilityVCFWithoutMD5s[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_missingchr3.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/example_variants_withSequenceDict_withoutmd5s.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/expected.testReferenceCompatibilityVCFWithoutMD5s_notcompatible.table) 0.091s passed
testReferenceCompatibilityWithoutMD5sMismatch 0.090s passed

Standard error

[June 12, 2025 at 8:58:09 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:10 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:11 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:11 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:11 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:11 PM GMT] org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibility done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280