Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > ApplyBQSRSparkIntegrationTest
9

tests
0

failures
0

ignored
6.051s

duration
100%

successful

Tests

Test Duration Result
testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) 1.059s passed
testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) 0.767s passed
testApplyBQSR[2](ApplyBQSR(args='null')) 0.766s passed
testApplyBQSR[3](ApplyBQSR(args='-OQ')) 0.696s passed
testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) 0.682s passed
testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) 0.675s passed
testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) 0.562s passed
testPRFailWithLowMaxCycle 0.275s passed
testPRNoFailWithHighMaxCycle 0.569s passed

Standard output

--------------------------------------------------------------------------------
[20:58:19] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[20:58:19] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle

Standard error

[June 12, 2025 at 8:58:15 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:15 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:16 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:17 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:18 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:18 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:19 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:19 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3177185280
[June 12, 2025 at 8:58:20 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3177185280